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2RF5
Asym. Unit
Info
Asym.Unit (42 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN TANKYRASE 1- CATALYTIC PARP DOMAIN
Authors
:
L. Lehtio, T. Karlberg, C. H. Arrowsmith, H. Berglund, R. Busam, R. Coll L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Ham M. D. Herman, L. Holmberg-Schiavone, I. Johansson, A. Kallas, T. Kote M. Moche, P. Nordlund, T. Nyman, C. Persson, J. Sagemark, M. Sundstrom A. G. Thorsell, L. Tresaugues, S. Van Den Berg, M. Welin, J. Weigelt, Structural Genomics Consortium (Sgc)
Date
:
28 Sep 07 (Deposition) - 09 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Catalytic Fragment, Parp, Structural Genomics, Structural Genomics Consortium, Sgc, Adp-Ribosylation, Ank Repeat, Chromosomal Protein, Glycosyltransferase, Golgi Apparatus, Membrane, Mrna Transport, Nad, Nuclear Pore Complex, Nucleus, Phosphorylation, Protein Transport, Telomere, Transferase, Translocation, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Lehtio, R. Collins, S. Van Den Berg, A. Johansson, L. G. Dahlgren, M. Hammarstrom, T. Helleday, L. Holmberg-Schiavone, T. Karlberg, J. Weigelt
Zinc Binding Catalytic Domain Of Human Tankyrase 1.
J. Mol. Biol. V. 379 136 2008
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:1234 , HIS A:1237 , CYS A:1242 , CYS A:1245
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
HIS A:1184 , SER A:1186 , PHE A:1188 , ILE A:1192 , PHE A:1197 , ASP A:1198 , HIS A:1201 , TYR A:1203 , HOH A:1412
BINDING SITE FOR RESIDUE GOL A 1326
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PARP_CATALYTIC (A:1112-1314)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PARP_CATALYTIC
PS51059
PARP catalytic domain profile.
TNKS1_HUMAN
1112-1317
1
A:1112-1314
[
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Exons
(6, 6)
Info
All Exons
Exon 1.35 (A:1104-1124)
Exon 1.36 (A:1125-1149)
Exon 1.37 (A:1150-1185)
Exon 1.38 (A:1185-1247)
Exon 1.39a (A:1247-1299 (gaps))
Exon 1.41c (A:1300-1314)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.34/1.35
2: Boundary 1.35/1.36
3: Boundary 1.36/1.37
4: Boundary 1.37/1.38
5: Boundary 1.38/1.39a
6: Boundary 1.39a/1.41c
7: Boundary 1.41c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000310430
1a
ENSE00001184319
chr8:
9413424-9414122
699
TNKS1_HUMAN
1-225
225
0
-
-
1.6b
ENST00000310430
6b
ENSE00001184302
chr8:
9437669-9437893
225
TNKS1_HUMAN
225-300
76
0
-
-
1.8
ENST00000310430
8
ENSE00001184295
chr8:
9473092-9473187
96
TNKS1_HUMAN
300-332
33
0
-
-
1.14b
ENST00000310430
14b
ENSE00001184291
chr8:
9537461-9537497
37
TNKS1_HUMAN
332-344
13
0
-
-
1.15a
ENST00000310430
15a
ENSE00001658888
chr8:
9538235-9538310
76
TNKS1_HUMAN
344-369
26
0
-
-
1.16
ENST00000310430
16
ENSE00001184284
chr8:
9562173-9562267
95
TNKS1_HUMAN
370-401
32
0
-
-
1.17
ENST00000310430
17
ENSE00001184280
chr8:
9563697-9563763
67
TNKS1_HUMAN
401-423
23
0
-
-
1.18a
ENST00000310430
18a
ENSE00001217818
chr8:
9564321-9564507
187
TNKS1_HUMAN
424-486
63
0
-
-
1.19b
ENST00000310430
19b
ENSE00001184276
chr8:
9565881-9566002
122
TNKS1_HUMAN
486-526
41
0
-
-
1.20
ENST00000310430
20
ENSE00001184274
chr8:
9567465-9567556
92
TNKS1_HUMAN
527-557
31
0
-
-
1.21a
ENST00000310430
21a
ENSE00001184272
chr8:
9567652-9567730
79
TNKS1_HUMAN
557-583
27
0
-
-
1.22a
ENST00000310430
22a
ENSE00001217782
chr8:
9577884-9578055
172
TNKS1_HUMAN
584-641
58
0
-
-
1.24
ENST00000310430
24
ENSE00001184264
chr8:
9584151-9584230
80
TNKS1_HUMAN
641-667
27
0
-
-
1.25b
ENST00000310430
25b
ENSE00001184259
chr8:
9588400-9588545
146
TNKS1_HUMAN
668-716
49
0
-
-
1.26
ENST00000310430
26
ENSE00001184256
chr8:
9590789-9590954
166
TNKS1_HUMAN
716-771
56
0
-
-
1.27a
ENST00000310430
27a
ENSE00001621845
chr8:
9592375-9592594
220
TNKS1_HUMAN
772-845
74
0
-
-
1.28
ENST00000310430
28
ENSE00001184247
chr8:
9592887-9592996
110
TNKS1_HUMAN
845-881
37
0
-
-
1.31a
ENST00000310430
31a
ENSE00001217850
chr8:
9605534-9605722
189
TNKS1_HUMAN
882-944
63
0
-
-
1.32b
ENST00000310430
32b
ENSE00001184239
chr8:
9609119-9609356
238
TNKS1_HUMAN
945-1024
80
0
-
-
1.33
ENST00000310430
33
ENSE00001184236
chr8:
9610054-9610136
83
TNKS1_HUMAN
1024-1051
28
0
-
-
1.34
ENST00000310430
34
ENSE00001184234
chr8:
9619026-9619146
121
TNKS1_HUMAN
1052-1092
41
0
-
-
1.35
ENST00000310430
35
ENSE00001184232
chr8:
9620657-9620754
98
TNKS1_HUMAN
1092-1124
33
1
A:1104-1124
21
1.36
ENST00000310430
36
ENSE00001184230
chr8:
9622226-9622300
75
TNKS1_HUMAN
1125-1149
25
1
A:1125-1149
25
1.37
ENST00000310430
37
ENSE00001184227
chr8:
9623202-9623307
106
TNKS1_HUMAN
1150-1185
36
1
A:1150-1185
36
1.38
ENST00000310430
38
ENSE00001184225
chr8:
9623749-9623935
187
TNKS1_HUMAN
1185-1247
63
1
A:1185-1247
63
1.39a
ENST00000310430
39a
ENSE00001184221
chr8:
9627616-9627772
157
TNKS1_HUMAN
1247-1299
53
1
A:1247-1299 (gaps)
53
1.41c
ENST00000310430
41c
ENSE00001326665
chr8:
9634160-9639856
5697
TNKS1_HUMAN
1300-1327
28
1
A:1300-1314
15
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
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Sorry, no Info available
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2rf5A00 (A:1104-1314)
View:
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(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Phosphoenolpyruvate Carboxykinase; domain 3
(62)
Homologous Superfamily
:
[code=3.90.228.10, no name defined]
(20)
Human (Homo sapiens)
(12)
1a
2rf5A00
A:1104-1314
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PARP_2rf5A01 (A:1105-1282)
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Clans
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)
(
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Families
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(
)
Organisms
(
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(
)
Clan
:
ADP-ribosyl
(56)
Family
:
PARP
(21)
Homo sapiens (Human)
(18)
1a
PARP-2rf5A01
A:1105-1282
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Chain A
Asymmetric Unit 1
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