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2RDT
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (223 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GLYCOLATE OXIDASE (GO) IN COMPLEX WITH CDST
Authors
:
M. S. Murray, R. P. Holmes, W. T. Lowther
Date
:
25 Sep 07 (Deposition) - 26 Feb 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Flavoprotein, Fmn, Glycolate Pathway, Oxidoreductase, Peroxisome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. S. Murray, R. P. Holmes, W. T. Lowther
Active Site And Loop 4 Movements Within Human Glycolate Oxidase: Implications For Substrate Specificity And Drug Design.
Biochemistry V. 47 2439 2008
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 5-(DODECYLTHIO)-1H-1,2,3-TRIAZOLE-... (2RDa)
2a: FLAVIN MONONUCLEOTIDE (FMNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2RD
1
Ligand/Ion
5-(DODECYLTHIO)-1H-1,2,3-TRIAZOLE-4-CARBOXYLIC ACID
2
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:26 , TYR A:27 , ALA A:79 , THR A:80 , ALA A:81 , SER A:108 , GLN A:130 , TYR A:132 , THR A:158 , LYS A:236 , SER A:258 , HIS A:260 , GLY A:261 , ARG A:263 , ASP A:291 , GLY A:292 , GLY A:293 , ARG A:295 , GLY A:314 , ARG A:315 , HOH A:374 , HOH A:406 , HOH A:447
BINDING SITE FOR RESIDUE FMN A 364
2
AC2
SOFTWARE
TYR A:26 , TRP A:110 , ALA A:111 , TYR A:132 , ARG A:167 , HIS A:260 , ARG A:263
BINDING SITE FOR RESIDUE 2RD A 365
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: FMN_HYDROXY_ACID_DH_2 (A:1-363)
2: FMN_HYDROXY_ACID_DH_1 (A:258-264)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FMN_HYDROXY_ACID_DH_2
PS51349
FMN-dependent alpha-hydroxy acid dehydrogenase domain profile.
HAOX1_HUMAN
1-365
1
A:1-363
2
FMN_HYDROXY_ACID_DH_1
PS00557
FMN-dependent alpha-hydroxy acid dehydrogenases active site.
HAOX1_HUMAN
258-264
1
A:258-264
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Exons
(8, 8)
Info
All Exons
Exon 1.1 (A:1-46)
Exon 1.2 (A:46-97)
Exon 1.3 (A:97-175)
Exon 1.4 (A:205-241)
Exon 1.5 (A:241-271)
Exon 1.6 (A:272-324)
Exon 1.7 (A:325-348)
Exon 1.8 (A:348-363)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000378789
1
ENSE00001478813
chr20:
7921121-7920933
189
HAOX1_HUMAN
1-46
46
1
A:1-46
46
1.2
ENST00000378789
2
ENSE00000658559
chr20:
7915282-7915131
152
HAOX1_HUMAN
46-97
52
1
A:46-97
52
1.3
ENST00000378789
3
ENSE00000658558
chr20:
7895066-7894811
256
HAOX1_HUMAN
97-182
86
1
A:97-175
79
1.4
ENST00000378789
4
ENSE00000658557
chr20:
7886976-7886801
176
HAOX1_HUMAN
182-241
60
1
A:205-241
37
1.5
ENST00000378789
5
ENSE00000658556
chr20:
7875871-7875780
92
HAOX1_HUMAN
241-271
31
1
A:241-271
31
1.6
ENST00000378789
6
ENSE00000658555
chr20:
7866511-7866353
159
HAOX1_HUMAN
272-324
53
1
A:272-324
53
1.7
ENST00000378789
7
ENSE00000658554
chr20:
7866237-7866168
70
HAOX1_HUMAN
325-348
24
1
A:325-348
24
1.8
ENST00000378789
8
ENSE00001478762
chr20:
7864310-7863628
683
HAOX1_HUMAN
348-370
23
1
A:348-363
16
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2rdta_ (A:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
automated matches
(48)
Protein domain
:
automated matches
(48)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2rdta_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2rdtA00 (A:0-363)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
2rdtA00
A:0-363
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_FMN_dh_2rdtA01 (A:15-362)
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Clan
:
TIM_barrel
(694)
Family
:
FMN_dh
(23)
Homo sapiens (Human)
(4)
1a
FMN_dh-2rdtA01
A:15-362
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Chain A
Asymmetric Unit 1
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Asym.Unit (63 KB)
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