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2RD7
Asym. Unit
Info
Asym.Unit (87 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
HUMAN COMPLEMENT MEMBRANE ATTACK PROTEINS SHARE A COMMON FOLD WITH BACTERIAL CYTOLYSINS
Authors
:
D. J. Slade, L. L. Lovelace, M. Chruszcz, W. Minor, L. Lebioda, J. M. Sodetz
Date
:
21 Sep 07 (Deposition) - 27 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Keywords
:
Membrane Attack System, Cleavage On Pair Of Basic Residues, Complement Alternate Pathway, Complement Pathway, Cytolysis, Egf-Like Domain, Glycoprotein, Immune Response, Innate Immunity, Membrane Attack Complex, Polymorphism, Secreted, Immune System
(Keyword Search:
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)
Reference
:
D. J. Slade, L. L. Lovelace, M. Chruszcz, W. Minor, L. Lebioda, J. M. Sodetz
Crystal Structure Of The Macpf Domain Of Human Complement Protein C8Alpha In Complex With The C8Gama Subunit
J. Mol. Biol. V. 379 331 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:310 , GLY C:166
BINDING SITE FOR RESIDUE CL C 183
[
close Site info
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014668 (R49Q, chain C, )
2: VAR_044319 (D98G, chain C, )
3: VAR_014669 (H104N, chain C, )
4: VAR_011890 (T377I, chain A, )
5: VAR_033800 (D428N, chain A, )
6: VAR_011891 (R455L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014668
R
69
Q
CO8G_HUMAN
Polymorphism
17614
C
R
49
Q
2
UniProt
VAR_044319
D
118
G
CO8G_HUMAN
Polymorphism
7850844
C
D
98
G
3
UniProt
VAR_014669
H
124
N
CO8G_HUMAN
Polymorphism
17613
C
H
104
N
4
UniProt
VAR_011890
T
407
I
CO8A_HUMAN
Polymorphism
706479
A
T
377
I
5
UniProt
VAR_033800
D
458
N
CO8A_HUMAN
Polymorphism
17114555
A
D
428
N
6
UniProt
VAR_011891
R
485
L
CO8A_HUMAN
Polymorphism
1620075
A
R
455
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LIPOCALIN (C:21-34)
2: MACPF_1 (A:300-311)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOCALIN
PS00213
Lipocalin signature.
CO8G_HUMAN
41-54
1
C:21-34
2
MACPF_1
PS00279
Membrane attack complex/perforin (MACPF) domain signature.
CO8A_HUMAN
330-341
1
A:300-311
[
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Exons
(14, 14)
Info
All Exons
Exon 1.1b (C:15-26)
Exon 1.2 (C:27-72 (gaps))
Exon 1.3 (C:72-95 (gaps))
Exon 1.4a (C:97-132 (gaps))
Exon 1.6c (C:132-166)
Exon 1.7a (C:166-179)
Exon 1.7c (C:179-180)
Exon 2.4 (A:109-125)
Exon 2.5 (A:125-188)
Exon 2.6 (A:189-255 (gaps))
Exon 2.7 (A:256-336)
Exon 2.8 (A:336-378 (gaps))
Exon 2.9 (A:378-430 (gaps))
Exon 2.10 (A:431-462)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4a
05: Boundary 1.4a/1.6c
06: Boundary 1.6c/1.7a
07: Boundary 1.7a/1.7c
08: Boundary 1.7c/-
09: Boundary 2.3/2.4
10: Boundary 2.4/2.5
11: Boundary 2.5/2.6
12: Boundary 2.6/2.7
13: Boundary 2.7/2.8
14: Boundary 2.8/2.9
15: Boundary 2.9/2.10
16: Boundary 2.10/2.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000224181
1b
ENSE00001834506
chr9:
139839713-139839910
198
CO8G_HUMAN
1-46
46
1
C:15-26
12
1.2
ENST00000224181
2
ENSE00000734163
chr9:
139840086-139840222
137
CO8G_HUMAN
47-92
46
1
C:27-72 (gaps)
46
1.3
ENST00000224181
3
ENSE00001194952
chr9:
139840381-139840451
71
CO8G_HUMAN
92-116
25
1
C:72-95 (gaps)
24
1.4a
ENST00000224181
4a
ENSE00000734168
chr9:
139840537-139840644
108
CO8G_HUMAN
116-152
37
1
C:97-132 (gaps)
36
1.6c
ENST00000224181
6c
ENSE00000734170
chr9:
139840917-139841018
102
CO8G_HUMAN
152-186
35
1
C:132-166
35
1.7a
ENST00000224181
7a
ENSE00001407255
chr9:
139841103-139841141
39
CO8G_HUMAN
186-199
14
1
C:166-179
14
1.7c
ENST00000224181
7c
ENSE00001902507
chr9:
139841220-139841419
200
CO8G_HUMAN
199-202
4
1
C:179-180
2
2.1
ENST00000361249
1
ENSE00001436108
chr1:
57320479-57320651
173
CO8A_HUMAN
1-26
26
0
-
-
2.2
ENST00000361249
2
ENSE00001390177
chr1:
57333282-57333375
94
CO8A_HUMAN
26-57
32
0
-
-
2.3
ENST00000361249
3
ENSE00001436153
chr1:
57340622-57340766
145
CO8A_HUMAN
58-106
49
0
-
-
2.4
ENST00000361249
4
ENSE00001030576
chr1:
57341735-57341882
148
CO8A_HUMAN
106-155
50
1
A:109-125
17
2.5
ENST00000361249
5
ENSE00001381670
chr1:
57347118-57347307
190
CO8A_HUMAN
155-218
64
1
A:125-188
64
2.6
ENST00000361249
6
ENSE00001030560
chr1:
57349154-57349354
201
CO8A_HUMAN
219-285
67
1
A:189-255 (gaps)
67
2.7
ENST00000361249
7
ENSE00001436552
chr1:
57351600-57351840
241
CO8A_HUMAN
286-366
81
1
A:256-336
81
2.8
ENST00000361249
8
ENSE00001382619
chr1:
57372340-57372465
126
CO8A_HUMAN
366-408
43
1
A:336-378 (gaps)
43
2.9
ENST00000361249
9
ENSE00001030541
chr1:
57373629-57373786
158
CO8A_HUMAN
408-460
53
1
A:378-430 (gaps)
53
2.10
ENST00000361249
10
ENSE00001436003
chr1:
57378076-57378298
223
CO8A_HUMAN
461-535
75
1
A:431-462
32
2.11
ENST00000361249
11
ENSE00001422483
chr1:
57383238-57383894
657
CO8A_HUMAN
535-584
50
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2rd7c_ (C:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Retinol binding protein-like
(261)
Protein domain
:
automated matches
(36)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d2rd7c_
C:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2rd7C00 (C:15-180)
View:
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Human (Homo sapiens)
(91)
1a
2rd7C00
C:15-180
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Nucleic
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Protein & NOT PROSITE
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Chain C
Asymmetric Unit 1
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