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2RD6
Biol. Unit 1
Info
Asym.Unit (65 KB)
Biol.Unit 1 (353 KB)
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(1)
Title
:
PARP COMPLEXED WITH A861695
Authors
:
C. H. Park
Date
:
21 Sep 07 (Deposition) - 23 Sep 08 (Release) - 17 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Protein-Inhibitor Complex, Adp-Ribosylation, Dna Damage, Dna Repair, Dna-Binding, Glycosyltransferase, Metal-Binding, Nad, Nucleus, Phosphorylation, Polymorphism, Transferase, Zinc, Zinc-Finger
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
C. H. Park
Parp Complexed With A861695
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: (2R)-2-(7-CARBAMOYL-1H-BENZIMIDAZO... (78Pa)
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Label:
No.
Name
Count
Type
Full Name
1
78P
6
Ligand/Ion
(2R)-2-(7-CARBAMOYL-1H-BENZIMIDAZOL-2-YL)-2-METHYLPYRROLIDINIUM
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:201 , GLY A:202 , TYR A:235 , PHE A:236 , SER A:243 , TYR A:246 , HOH A:1069
BINDING SITE FOR RESIDUE 78P A 900
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SAPs(SNPs)/Variants
(2, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014715 (A101A, chain A, )
2: VAR_019173 (K279R, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014715
V
762
A
PARP1_HUMAN
Polymorphism
1136410
A
A
101
A
2
UniProt
VAR_019173
K
940
R
PARP1_HUMAN
Polymorphism
3219145
A
K
279
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: PARP_ALPHA_HD (A:1-118)
2: PARP_CATALYTIC (A:127-350)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PARP_ALPHA_HD
PS51060
PARP alpha-helical domain profile.
PARP1_HUMAN
662-779
6
A:1-118
2
PARP_CATALYTIC
PS51059
PARP catalytic domain profile.
PARP1_HUMAN
788-1014
6
A:127-350
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2rd6a1 (A:1-135)
2a: SCOP_d2rd6a2 (A:136-350)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Domain of poly(ADP-ribose) polymerase
(38)
Superfamily
:
Domain of poly(ADP-ribose) polymerase
(38)
Family
:
Domain of poly(ADP-ribose) polymerase
(16)
Protein domain
:
Domain of poly(ADP-ribose) polymerase
(16)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2rd6a1
A:1-135
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ADP-ribosylation
(157)
Superfamily
:
ADP-ribosylation
(157)
Family
:
Poly(ADP-ribose) polymerase, C-terminal domain
(18)
Protein domain
:
Poly(ADP-ribose) polymerase, C-terminal domain
(16)
Human (Homo sapiens) [TaxId: 9606]
(8)
2a
d2rd6a2
A:136-350
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2rd6A02 (A:137-349)
2a: CATH_2rd6A01 (A:1-136)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Phosphoenolpyruvate Carboxykinase; domain 3
(62)
Homologous Superfamily
:
[code=3.90.228.10, no name defined]
(20)
Human (Homo sapiens)
(12)
1a
2rd6A02
A:137-349
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Poly(ADP-ribose) Polymerase; domain 1
(21)
Homologous Superfamily
:
Poly(ADP-ribose) Polymerase, domain 1
(21)
Human (Homo sapiens)
(12)
2a
2rd6A01
A:1-136
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (65 KB)
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