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2RCT
Asym. Unit
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Asym.Unit (32 KB)
Biol.Unit 1 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN HOLO CELLULAR RETINOL-BINDING PROTEIN II (CRBP-II)
Authors
:
H. L. Monaco, S. Capaldi, M. Perduca
Date
:
20 Sep 07 (Deposition) - 02 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cellular Retinol-Binding Protein Ii, Crbp Ii, Retinol, Lipid-Binding Protein, X-Ray Structure, Cytoplasm, Transport, Vitamin A
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Tarter, S. Capaldi, M. E. Carrizo, E. Ambrosi, M. Perduca, H. L. Monaco
Crystal Structure Of Human Cellular Retinol-Binding Protein Ii To 1. 2 A Resolution.
Proteins V. 70 1626 2007
(for further references see the
PDB file header
)
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: RETINOL (RTLa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: L(+)-TARTARIC ACID (TLAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
RTL
1
Ligand/Ion
RETINOL
2
SO4
2
Ligand/Ion
SULFATE ION
3
TLA
1
Ligand/Ion
L(+)-TARTARIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:26 , PHE A:27 , ARG A:30 , HOH A:254 , HOH A:309
BINDING SITE FOR RESIDUE SO4 A 151
2
AC2
SOFTWARE
ARG A:58 , LYS A:98 , HOH A:231 , HOH A:281
BINDING SITE FOR RESIDUE SO4 A 152
3
AC3
SOFTWARE
PHE A:16 , GLN A:38 , LYS A:40 , THR A:51 , LEU A:77 , TRP A:106 , GLN A:108
BINDING SITE FOR RESIDUE RTL A 140
4
AC4
SOFTWARE
ASN A:13 , GLU A:14 , ASN A:15 , PHE A:16 , GLU A:17 , ARG A:35 , LYS A:133 , HOH A:169 , HOH A:234 , HOH A:258 , HOH A:261 , HOH A:272
BINDING SITE FOR RESIDUE TLA A 150
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FABP (A:6-23)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FABP
PS00214
Cytosolic fatty-acid binding proteins signature.
RET2_HUMAN
7-24
1
A:6-23
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Exons
(4, 4)
Info
All Exons
Exon 1.3a (A:0-24)
Exon 1.4 (A:24-83)
Exon 1.5b (A:84-117)
Exon 1.6 (A:118-133)
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5b
4: Boundary 1.5b/1.6
5: Boundary 1.6/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000232217
3a
ENSE00002067741
chr3:
139195358-139195229
130
RET2_HUMAN
1-25
25
1
A:0-24
25
1.4
ENST00000232217
4
ENSE00000778977
chr3:
139181132-139180954
179
RET2_HUMAN
25-84
60
1
A:24-83
60
1.5b
ENST00000232217
5b
ENSE00000778975
chr3:
139173672-139173571
102
RET2_HUMAN
85-118
34
1
A:84-117
34
1.6
ENST00000232217
6
ENSE00000794927
chr3:
139172008-139171726
283
RET2_HUMAN
119-134
16
1
A:118-133
16
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2rcta_ (A:)
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Protein Domains
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Organisms
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)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Fatty acid binding protein-like
(183)
Protein domain
:
automated matches
(26)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d2rcta_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2rctA00 (A:-3-137)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Human (Homo sapiens)
(91)
1a
2rctA00
A:-3-137
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Lipocalin_2rctA01 (A:5-133)
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Clan
:
Calycin
(163)
Family
:
Lipocalin
(123)
Homo sapiens (Human)
(41)
1a
Lipocalin-2rctA01
A:5-133
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Asymmetric Unit 1
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