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2RC6
Asym. Unit
Info
Asym.Unit (421 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
Biol.Unit 3 (107 KB)
Biol.Unit 4 (107 KB)
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(1)
Title
:
REFINED STRUCTURE OF FNR FROM LEPTOSPIRA INTERROGANS BOUND TO NADP+
Authors
:
A. S. Nascimento, D. L. Catalano-Dupuy, E. A. Ceccarelli, I. Polikarpo
Date
:
19 Sep 07 (Deposition) - 25 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Fnr, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. S. Nascimento, D. L. Catalano-Dupuy, A. Bernardes, M. O. Neto, M. A. Santos, E. A. Ceccarelli, I. Polikarpov
Crystal Structures Of Leptospira Interrogans Fad-Containing Ferredoxin-Nadp+ Reductase And Its Complex With Nadp+.
Bmc Struct. Biol. V. 7 69 2007
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
4a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SO4
8
Ligand/Ion
SULFATE ION
4
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:189 , HIS A:224
BINDING SITE FOR RESIDUE ZN A 315
02
AC2
SOFTWARE
GLU A:297 , HIS A:301
BINDING SITE FOR RESIDUE SO4 A 316
03
AC3
SOFTWARE
GLU B:297 , HIS B:301
BINDING SITE FOR RESIDUE SO4 B 316
04
AC4
SOFTWARE
GLU C:297 , HIS C:301
BINDING SITE FOR RESIDUE SO4 C 315
05
AC5
SOFTWARE
LEU C:188 , GLU C:189 , LYS C:223 , HIS C:224
BINDING SITE FOR RESIDUE SO4 C 316
06
AC6
SOFTWARE
GLU D:297 , HIS D:301
BINDING SITE FOR RESIDUE SO4 D 315
07
AC7
SOFTWARE
LYS B:44 , ASN B:125
BINDING SITE FOR RESIDUE SO4 D 316
08
AC8
SOFTWARE
ARG A:94 , LEU A:95 , TYR A:96 , SER A:97 , ILE A:115 , ILE A:116 , LYS A:117 , ASP A:119 , ILE A:121 , PHE A:130 , GLY A:132 , CYS A:134 , SER A:135 , THR A:175 , GLU A:312 , TYR A:314 , HOH A:433 , HOH A:480
BINDING SITE FOR RESIDUE FAD A 415
09
AC9
SOFTWARE
LYS A:117 , THR A:173 , GLY A:174 , THR A:175 , ALA A:205 , PRO A:206 , SER A:234 , ARG A:235 , ARG A:245 , TYR A:247 , PRO A:275 , MET A:278 , HOH A:420 , HOH A:422 , HOH A:423 , HOH A:454
BINDING SITE FOR RESIDUE NAP A 416
10
BC1
SOFTWARE
ARG B:94 , LEU B:95 , TYR B:96 , SER B:97 , ILE B:115 , ILE B:116 , LYS B:117 , ASP B:119 , ILE B:121 , PHE B:130 , GLY B:132 , CYS B:134 , SER B:135 , THR B:175 , GLU B:312 , TYR B:314 , HOH B:443 , HOH B:453
BINDING SITE FOR RESIDUE FAD B 415
11
BC2
SOFTWARE
LYS B:117 , THR B:173 , GLY B:174 , THR B:175 , ALA B:205 , PRO B:206 , SER B:234 , ARG B:235 , ARG B:245 , TYR B:247 , PRO B:275 , MET B:278 , HOH B:421 , HOH B:455
BINDING SITE FOR RESIDUE NAP B 416
12
BC3
SOFTWARE
ARG C:94 , LEU C:95 , TYR C:96 , SER C:97 , ILE C:115 , ILE C:116 , LYS C:117 , ASP C:119 , ILE C:121 , PHE C:130 , GLY C:132 , CYS C:134 , SER C:135 , THR C:175 , GLU C:312 , TYR C:314 , HOH C:424 , HOH C:431 , HOH C:461 , HOH C:462
BINDING SITE FOR RESIDUE FAD C 415
13
BC4
SOFTWARE
LYS C:117 , THR C:173 , GLY C:174 , THR C:175 , ALA C:205 , PRO C:206 , SER C:234 , ARG C:235 , ARG C:245 , TYR C:247 , PRO C:275 , MET C:278 , HOH C:421 , HOH C:437 , HOH C:442 , HOH C:444 , HOH C:467
BINDING SITE FOR RESIDUE NAP C 416
14
BC5
SOFTWARE
GLU A:80 , ALA A:83 , LYS A:84 , ARG D:94 , LEU D:95 , TYR D:96 , SER D:97 , ILE D:115 , ILE D:116 , LYS D:117 , ASP D:119 , ILE D:121 , PHE D:130 , GLY D:132 , CYS D:134 , SER D:135 , THR D:175 , GLU D:312 , TYR D:314 , HOH D:427 , HOH D:462
BINDING SITE FOR RESIDUE FAD D 415
15
BC6
SOFTWARE
LYS D:117 , THR D:173 , GLY D:174 , THR D:175 , ALA D:205 , PRO D:206 , SER D:234 , ARG D:235 , ARG D:245 , TYR D:247 , PRO D:275 , MET D:278 , HOH D:442 , HOH D:464
BINDING SITE FOR RESIDUE NAP D 416
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2rc6a1 (A:7-158)
1b: SCOP_d2rc6b1 (B:7-158)
1c: SCOP_d2rc6c1 (C:7-158)
1d: SCOP_d2rc6d1 (D:7-158)
2a: SCOP_d2rc6a2 (A:159-314)
2b: SCOP_d2rc6b2 (B:159-314)
2c: SCOP_d2rc6c2 (C:159-314)
2d: SCOP_d2rc6d2 (D:159-314)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Leptospira interrogans [TaxId: 173]
(2)
1a
d2rc6a1
A:7-158
1b
d2rc6b1
B:7-158
1c
d2rc6c1
C:7-158
1d
d2rc6d1
D:7-158
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Leptospira interrogans [TaxId: 173]
(2)
2a
d2rc6a2
A:159-314
2b
d2rc6b2
B:159-314
2c
d2rc6c2
C:159-314
2d
d2rc6d2
D:159-314
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2rc6A02 (A:154-314)
1b: CATH_2rc6B02 (B:154-314)
1c: CATH_2rc6C02 (C:154-314)
1d: CATH_2rc6D02 (D:154-314)
2a: CATH_2rc6A01 (A:7-153)
2b: CATH_2rc6B01 (B:7-153)
2c: CATH_2rc6C01 (C:7-153)
2d: CATH_2rc6D01 (D:7-153)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module
(85)
Leptospira interrogans. Organism_taxid: 173.
(2)
1a
2rc6A02
A:154-314
1b
2rc6B02
B:154-314
1c
2rc6C02
C:154-314
1d
2rc6D02
D:154-314
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Leptospira interrogans. Organism_taxid: 173.
(2)
2a
2rc6A01
A:7-153
2b
2rc6B01
B:7-153
2c
2rc6C01
C:7-153
2d
2rc6D01
D:7-153
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_NAD_binding_1_2rc6D01 (D:170-284)
1b: PFAM_NAD_binding_1_2rc6D02 (D:170-284)
1c: PFAM_NAD_binding_1_2rc6D03 (D:170-284)
1d: PFAM_NAD_binding_1_2rc6D04 (D:170-284)
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Clans
(
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
NAD_Ferredoxin
(30)
Family
:
NAD_binding_1
(30)
Leptospira interrogans
(2)
1a
NAD_binding_1-2rc6D01
D:170-284
1b
NAD_binding_1-2rc6D02
D:170-284
1c
NAD_binding_1-2rc6D03
D:170-284
1d
NAD_binding_1-2rc6D04
D:170-284
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Asym.Unit (421 KB)
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