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2RC3
Asym. Unit
Info
Asym.Unit (106 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CBS DOMAIN, NE2398
Authors
:
A. Dong, X. Xu, Y. Korniyenko, A. Yakunin, H. Zheng, J. R. Walker, A. M. Edwards, A. Joachimiak, A. Savchenko, Midwest Center For Structural Genomics (Mcsg)
Date
:
19 Sep 07 (Deposition) - 02 Oct 07 (Release) - 17 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Cbs Domain, In Situ Proteolysis, Br, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Dong, X. Xu, A. Korniyenko, A. Yakunin, H. Zheng, J. R. Walker, A. M. Edwards, A. Joachimiak, A. Savchenko
Crystal Structure Of Cbs Domain, Ne2398.
To Be Published
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 43)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1aa: BROMIDE ION (BRaa)
1ab: BROMIDE ION (BRab)
1ac: BROMIDE ION (BRac)
1ad: BROMIDE ION (BRad)
1ae: BROMIDE ION (BRae)
1af: BROMIDE ION (BRaf)
1ag: BROMIDE ION (BRag)
1ah: BROMIDE ION (BRah)
1ai: BROMIDE ION (BRai)
1aj: BROMIDE ION (BRaj)
1ak: BROMIDE ION (BRak)
1al: BROMIDE ION (BRal)
1am: BROMIDE ION (BRam)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
1m: BROMIDE ION (BRm)
1n: BROMIDE ION (BRn)
1o: BROMIDE ION (BRo)
1p: BROMIDE ION (BRp)
1q: BROMIDE ION (BRq)
1r: BROMIDE ION (BRr)
1s: BROMIDE ION (BRs)
1t: BROMIDE ION (BRt)
1u: BROMIDE ION (BRu)
1v: BROMIDE ION (BRv)
1w: BROMIDE ION (BRw)
1x: BROMIDE ION (BRx)
1y: BROMIDE ION (BRy)
1z: BROMIDE ION (BRz)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
39
Ligand/Ion
BROMIDE ION
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:76 , ARG B:124 , HIS B:125 , HOH C:1001
BINDING SITE FOR RESIDUE BR B 171
02
AC2
SOFTWARE
HOH B:1013 , THR C:74 , ARG C:76 , ARG C:124
BINDING SITE FOR RESIDUE BR C 171
03
AC3
SOFTWARE
THR A:74 , ARG A:76 , ARG A:124 , BR A:174 , HOH D:1017
BINDING SITE FOR RESIDUE BR A 171
04
AC4
SOFTWARE
HOH A:1005 , ARG D:76 , ARG D:124 , HOH D:1016
BINDING SITE FOR RESIDUE BR D 171
05
AC5
SOFTWARE
ARG D:100
BINDING SITE FOR RESIDUE BR D 172
06
AC6
SOFTWARE
ARG B:100 , GLN B:101
BINDING SITE FOR RESIDUE BR B 172
07
AC7
SOFTWARE
PRO B:42
BINDING SITE FOR RESIDUE BR B 173
08
AC8
SOFTWARE
PRO C:42 , ASP C:43
BINDING SITE FOR RESIDUE BR C 173
09
AC9
SOFTWARE
ARG D:100 , GLN D:101 , HOH D:1113
BINDING SITE FOR RESIDUE BR D 173
10
BC1
SOFTWARE
ARG C:100 , GLN C:101 , BR C:183 , GLY D:132
BINDING SITE FOR RESIDUE BR C 174
11
BC2
SOFTWARE
HOH B:1182 , LYS D:68 , HOH D:1033
BINDING SITE FOR RESIDUE BR D 174
12
BC3
SOFTWARE
PRO A:42
BINDING SITE FOR RESIDUE BR A 172
13
BC4
SOFTWARE
LYS A:24 , THR A:25 , HIS A:28 , LYS D:87
BINDING SITE FOR RESIDUE BR D 175
14
BC5
SOFTWARE
GLU D:96
BINDING SITE FOR RESIDUE BR D 176
15
BC6
SOFTWARE
ALA A:39 , LYS A:52
BINDING SITE FOR RESIDUE BR A 173
16
BC7
SOFTWARE
ALA D:39 , LYS D:52
BINDING SITE FOR RESIDUE BR D 177
17
BC8
SOFTWARE
ARG C:100
BINDING SITE FOR RESIDUE BR C 176
18
BC9
SOFTWARE
GLY D:41 , PRO D:42 , ASP D:43
BINDING SITE FOR RESIDUE BR D 178
19
CC1
SOFTWARE
ARG A:124 , BR A:171 , HOH A:1001 , HOH A:1056 , HOH A:1144
BINDING SITE FOR RESIDUE BR A 174
20
CC2
SOFTWARE
ALA C:39 , LYS C:52
BINDING SITE FOR RESIDUE BR C 177
21
CC3
SOFTWARE
THR D:25 , HIS D:28
BINDING SITE FOR RESIDUE BR D 179
22
CC4
SOFTWARE
HOH C:1078 , THR D:25
BINDING SITE FOR RESIDUE BR C 178
23
CC5
SOFTWARE
GLU B:32
BINDING SITE FOR RESIDUE BR B 174
24
CC6
SOFTWARE
PRO B:42 , ASP B:43 , GLU D:67 , HOH D:1126
BINDING SITE FOR RESIDUE BR D 180
25
CC7
SOFTWARE
GLY A:41 , PRO A:42 , ASP A:43 , HOH A:1106
BINDING SITE FOR RESIDUE BR A 175
26
CC8
SOFTWARE
GLN C:93
BINDING SITE FOR RESIDUE BR C 179
27
CC9
SOFTWARE
SER A:45
BINDING SITE FOR RESIDUE BR A 176
28
DC1
SOFTWARE
ASP D:106 , LEU D:107 , ASP D:130 , HOH D:1083
BINDING SITE FOR RESIDUE BR D 182
29
DC2
SOFTWARE
SER C:45
BINDING SITE FOR RESIDUE BR C 180
30
DC3
SOFTWARE
ARG A:100 , GLN A:101 , HOH A:1038 , GLY B:132 , HOH B:1095
BINDING SITE FOR RESIDUE BR A 177
31
DC4
SOFTWARE
ASN C:108
BINDING SITE FOR RESIDUE BR C 181
32
DC5
SOFTWARE
ASP C:131 , GLY C:132 , HOH C:1102
BINDING SITE FOR RESIDUE BR C 182
33
DC6
SOFTWARE
THR D:74 , HOH D:1016 , HOH D:1086 , HOH D:1098
BINDING SITE FOR RESIDUE BR D 183
34
DC7
SOFTWARE
VAL B:37
BINDING SITE FOR RESIDUE BR B 175
35
DC8
SOFTWARE
ARG C:100 , BR C:174 , HOH C:1103
BINDING SITE FOR RESIDUE BR C 183
36
DC9
SOFTWARE
HIS A:35
BINDING SITE FOR RESIDUE BR A 178
37
EC1
SOFTWARE
ARG A:76 , ILE A:118 , THR A:119 , ARG A:122 , VAL A:123 , ARG A:124 , ILE A:140 , HOH A:1082 , ASP B:113 , LYS D:33 , THR D:36 , VAL D:38 , ILE D:58 , GLY D:59 , ALA D:60 , LEU D:62 , HIS D:125 , LEU D:137 , SER D:139 , ILE D:140 , GLY D:141 , ASP D:142 , LYS D:145 , HOH D:1007 , HOH D:1009 , HOH D:1028 , HOH D:1144
BINDING SITE FOR RESIDUE NAD D 1000
38
EC2
SOFTWARE
ARG B:76 , ILE B:118 , THR B:119 , ARG B:122 , VAL B:123 , ARG B:124 , ILE B:140 , LYS C:33 , THR C:36 , VAL C:37 , VAL C:38 , ILE C:58 , GLY C:59 , ALA C:60 , LEU C:62 , HIS C:125 , LEU C:137 , SER C:139 , ILE C:140 , GLY C:141 , ASP C:142 , LYS C:145 , HOH C:1004 , HOH C:1010 , HOH C:1048 , HOH C:1095 , HOH C:1096 , HOH C:1155 , HOH C:1162
BINDING SITE FOR RESIDUE NAD C 1000
39
EC3
SOFTWARE
LYS B:33 , THR B:36 , VAL B:38 , ILE B:58 , GLY B:59 , ALA B:60 , LEU B:62 , HIS B:125 , LEU B:137 , SER B:139 , ILE B:140 , GLY B:141 , ASP B:142 , LYS B:145 , HOH B:1004 , HOH B:1005 , HOH B:1062 , HOH B:1094 , ARG C:76 , ILE C:118 , THR C:119 , ARG C:122 , VAL C:123 , ARG C:124 , ILE C:140 , HOH C:1086 , ASP D:113
BINDING SITE FOR RESIDUE NAD B 1000
40
EC4
SOFTWARE
LYS A:33 , THR A:36 , VAL A:38 , ILE A:58 , GLY A:59 , ALA A:60 , LEU A:62 , HIS A:125 , LEU A:137 , SER A:139 , ILE A:140 , GLY A:141 , ASP A:142 , LYS A:145 , HOH A:1010 , HOH A:1037 , HOH A:1135 , HOH A:1171 , ARG D:76 , ILE D:118 , THR D:119 , ARG D:122 , VAL D:123 , ARG D:124 , ILE D:140
BINDING SITE FOR RESIDUE NAD A 1000
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2rc3a1 (A:23-149)
1b: SCOP_d2rc3b_ (B:)
1c: SCOP_d2rc3c_ (C:)
1d: SCOP_d2rc3d_ (D:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CBS-domain pair
(75)
Superfamily
:
CBS-domain pair
(75)
Family
:
CBS-domain pair
(50)
Protein domain
:
Uncharacterized protein NE2398
(1)
Nitrosomonas europaea [TaxId: 915]
(1)
1a
d2rc3a1
A:23-149
1b
d2rc3b_
B:
1c
d2rc3c_
C:
1d
d2rc3d_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_CBS_2rc3D01 (D:94-146)
1b: PFAM_CBS_2rc3D02 (D:94-146)
1c: PFAM_CBS_2rc3D03 (D:94-146)
1d: PFAM_CBS_2rc3D04 (D:94-146)
1e: PFAM_CBS_2rc3D05 (D:94-146)
1f: PFAM_CBS_2rc3D06 (D:94-146)
1g: PFAM_CBS_2rc3D07 (D:94-146)
1h: PFAM_CBS_2rc3D08 (D:94-146)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: CBS]
(51)
Family
:
CBS
(51)
Nitrosomonas europaea
(1)
1a
CBS-2rc3D01
D:94-146
1b
CBS-2rc3D02
D:94-146
1c
CBS-2rc3D03
D:94-146
1d
CBS-2rc3D04
D:94-146
1e
CBS-2rc3D05
D:94-146
1f
CBS-2rc3D06
D:94-146
1g
CBS-2rc3D07
D:94-146
1h
CBS-2rc3D08
D:94-146
[
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]
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