PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2RBE
Asym. Unit
Info
Asym.Unit (181 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (90 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE DISCOVERY OF 2-ANILINOTHIAZOLONES AS 11BETA-HSD1 INHIBITORS
Authors
:
J. Zhang, S. R. Jordan, V. Li
Date
:
18 Sep 07 (Deposition) - 15 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Alpha Beta, 3-Layer(Aba) Sandwich, Rossmann Fold, Nad(P)- Binding Rossmann-Like Domain, Endoplasmic Reticulum, Glycoprotein, Lipid Metabolism, Membrane, Microsome, Nadp, Oxidoreductase, Signal-Anchor, Steroid Metabolism, Transmembrane, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Yuan, D. J. St Jean, Q. Liu, L. Cai, A. Li, N. Han, G. Moniz, B. Askew, R. W. Hungate, L. Johansson, L. Tedenborg, D. Pyring, M. Williams, C. Hale, M. Chen, R. Cupples, J. Zhang, S. Jordan, M. D. Bartberger, Y. Sun, M. Emery, M. Wang, C. Fotsch
The Discovery Of 2-Anilinothiazolones As 11Beta-Hsd1 Inhibitors.
Bioorg. Med. Chem. Lett. V. 17 6056 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
1b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
1c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
1d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
2a: (5R)-2-[(2-FLUOROPHENYL)AMINO]-5-(... (ZMGa)
2b: (5R)-2-[(2-FLUOROPHENYL)AMINO]-5-(... (ZMGb)
2c: (5R)-2-[(2-FLUOROPHENYL)AMINO]-5-(... (ZMGc)
2d: (5R)-2-[(2-FLUOROPHENYL)AMINO]-5-(... (ZMGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NDP
4
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2
ZMG
4
Ligand/Ion
(5R)-2-[(2-FLUOROPHENYL)AMINO]-5-(1-METHYLETHYL)-1,3-THIAZOL-4(5H)-ONE
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:170 , ALA A:172 , TYR A:177 , TYR A:183 , LEU A:217 , VAL A:227 , NDP A:501 , HOH A:631
BINDING SITE FOR RESIDUE ZMG A 601
2
AC2
SOFTWARE
ILE B:121 , THR B:124 , SER B:170 , ALA B:172 , TYR B:183 , NDP B:502 , HOH B:613
BINDING SITE FOR RESIDUE ZMG B 602
3
AC3
SOFTWARE
ILE C:121 , SER C:170 , TYR C:183 , NDP C:503 , HOH C:631
BINDING SITE FOR RESIDUE ZMG C 603
4
AC4
SOFTWARE
SER D:170 , ALA D:172 , TYR D:183 , NDP D:504 , HOH D:720
BINDING SITE FOR RESIDUE ZMG D 604
5
AC5
SOFTWARE
GLY A:41 , SER A:43 , LYS A:44 , GLY A:45 , ILE A:46 , ALA A:65 , ARG A:66 , SER A:67 , THR A:92 , MET A:93 , ASN A:119 , ILE A:121 , VAL A:168 , SER A:169 , SER A:170 , TYR A:183 , LYS A:187 , LEU A:215 , GLY A:216 , LEU A:217 , ILE A:218 , THR A:220 , THR A:222 , ALA A:223 , ZMG A:601 , HOH A:604 , HOH A:617 , HOH A:619 , HOH A:627 , HOH A:631
BINDING SITE FOR RESIDUE NDP A 501
6
AC6
SOFTWARE
GLY B:41 , ALA B:42 , SER B:43 , GLY B:45 , ILE B:46 , ALA B:65 , ARG B:66 , SER B:67 , THR B:92 , MET B:93 , ASN B:119 , ILE B:121 , VAL B:168 , SER B:169 , SER B:170 , TYR B:183 , LYS B:187 , LEU B:215 , GLY B:216 , LEU B:217 , ILE B:218 , THR B:220 , THR B:222 , ALA B:223 , ZMG B:602 , HOH B:604 , HOH B:608 , HOH B:613 , HOH B:616 , HOH B:627 , HOH B:632 , HOH B:641 , HOH B:681
BINDING SITE FOR RESIDUE NDP B 502
7
AC7
SOFTWARE
GLY C:41 , ALA C:42 , SER C:43 , LYS C:44 , GLY C:45 , ILE C:46 , ARG C:66 , SER C:67 , THR C:92 , MET C:93 , ASN C:119 , ILE C:121 , VAL C:168 , SER C:169 , SER C:170 , TYR C:183 , LYS C:187 , LEU C:215 , GLY C:216 , LEU C:217 , ILE C:218 , THR C:220 , THR C:222 , ALA C:223 , ZMG C:603 , HOH C:608 , HOH C:619 , HOH C:623 , HOH C:625 , HOH C:631 , HOH C:635 , HOH C:642 , HOH C:645
BINDING SITE FOR RESIDUE NDP C 503
8
AC8
SOFTWARE
GLY D:41 , ALA D:42 , SER D:43 , LYS D:44 , GLY D:45 , ILE D:46 , ALA D:65 , ARG D:66 , SER D:67 , THR D:92 , MET D:93 , ASN D:119 , ILE D:121 , VAL D:168 , SER D:169 , SER D:170 , TYR D:183 , LYS D:187 , LEU D:215 , GLY D:216 , LEU D:217 , ILE D:218 , THR D:220 , THR D:222 , ALA D:223 , ZMG D:604 , HOH D:605 , HOH D:611 , HOH D:614 , HOH D:622 , HOH D:626 , HOH D:655 , HOH D:677 , HOH D:720 , HOH D:722
BINDING SITE FOR RESIDUE NDP D 504
[
close Site info
]
SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035845 (V148E, chain A/B/C/D, )
2: VAR_DHI1_HUMAN_CCDS1489_1_01 (V148E, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035845
V
148
E
DHI1_HUMAN
Unclassified
---
A/B/C/D
V
148
E
2
CancerSNP
VAR_DHI1_HUMAN_CCDS1489_1_01
*
V
148
E
DHI1_HUMAN
Disease (Breast cancer)
---
A/B/C/D
V
148
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:170-198,B:170-198,C:170-198,D:17...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DHI1_HUMAN
170-198
4
A:170-198
B:170-198
C:170-198
D:170-198
[
close PROSITE info
]
Exons
(6, 24)
Info
All Exons
Exon 1.2b (A:25-30 | B:27-30 | C:26-30 | D:25...)
Exon 1.3 (A:30-73 | B:30-73 | C:30-73 | D:30...)
Exon 1.4 (A:74-111 | B:74-111 | C:74-111 | D...)
Exon 1.5 (A:111-173 | B:111-173 | C:111-173 ...)
Exon 1.6 (A:173-221 | B:173-221 | C:173-221 ...)
Exon 1.7a (A:221-284 (gaps) | B:221-281 | C:2...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7a
7: Boundary 1.7a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367028
1a
ENSE00001443288
chr1:
209859510-209859630
121
DHI1_HUMAN
-
0
0
-
-
1.2b
ENST00000367028
2b
ENSE00001443287
chr1:
209878240-209878375
136
DHI1_HUMAN
1-30
30
4
A:25-30
B:27-30
C:26-30
D:25-30
6
4
5
6
1.3
ENST00000367028
3
ENSE00000792110
chr1:
209879156-209879286
131
DHI1_HUMAN
30-73
44
4
A:30-73
B:30-73
C:30-73
D:30-73
44
44
44
44
1.4
ENST00000367028
4
ENSE00000792111
chr1:
209880054-209880165
112
DHI1_HUMAN
74-111
38
4
A:74-111
B:74-111
C:74-111
D:74-111
38
38
38
38
1.5
ENST00000367028
5
ENSE00000792112
chr1:
209880288-209880473
186
DHI1_HUMAN
111-173
63
4
A:111-173
B:111-173
C:111-173
D:111-173
63
63
63
63
1.6
ENST00000367028
6
ENSE00000792113
chr1:
209905781-209905924
144
DHI1_HUMAN
173-221
49
4
A:173-221
B:173-221
C:173-221
D:173-221
49
49
49
49
1.7a
ENST00000367028
7a
ENSE00001443286
chr1:
209907649-209908209
561
DHI1_HUMAN
221-292
72
4
A:221-284 (gaps)
B:221-281
C:221-280
D:221-285
64
61
60
65
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2rbea_ (A:)
1b: SCOP_d2rbeb_ (B:)
1c: SCOP_d2rbec_ (C:)
1d: SCOP_d2rbed_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
11-beta-hydroxysteroid dehydrogenase 1
(34)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d2rbea_
A:
1b
d2rbeb_
B:
1c
d2rbec_
C:
1d
d2rbed_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2rbeB00 (B:27-281)
1b: CATH_2rbeC00 (C:26-280)
1c: CATH_2rbeA00 (A:25-284)
1d: CATH_2rbeD00 (D:25-285)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
2rbeB00
B:27-281
1b
2rbeC00
C:26-280
1c
2rbeA00
A:25-284
1d
2rbeD00
D:25-285
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (181 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2RBE
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
