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2R9W
Biol. Unit 1
Info
Asym.Unit (138 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (132 KB)
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(1)
Title
:
AMPC BETA-LACTAMASE WITH BOUND PHTHALAMIDE INHIBITOR
Authors
:
K. Babaoglu, B. K. Shoichet
Date
:
13 Sep 07 (Deposition) - 15 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Ampc Beta Lactamase, Pthalamide, Antibiotic Resistance, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Babaoglu, A. Simeonov, J. J. Irwin, M. E. Nelson, B. Feng, C. J. Thomas, L. Cancian, M. P. Costi, D. A. Maltby, A. Jadhav, J. Inglese, C. P. Austin, B. K. Shoichet
Comprehensive Mechanistic Analysis Of Hits From High-Throughput And Docking Screens Against Beta-Lactamase.
J. Med. Chem. V. 51 2502 2008
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: 2-[(1R)-1-CARBOXY-2-NAPHTHALEN-1-Y... (23Ca)
1b: 2-[(1R)-1-CARBOXY-2-NAPHTHALEN-1-Y... (23Cb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
2h: PHOSPHATE ION (PO4h)
2i: PHOSPHATE ION (PO4i)
2j: PHOSPHATE ION (PO4j)
View:
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Label:
No.
Name
Count
Type
Full Name
1
23C
1
Ligand/Ion
2-[(1R)-1-CARBOXY-2-NAPHTHALEN-1-YLETHYL]-1,3-DIOXO-2,3-DIHYDRO-1H-ISOINDOLE-5-CARBOXYLIC ACID
2
PO4
5
Ligand/Ion
PHOSPHATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC9 (SOFTWARE)
7: BC1 (SOFTWARE)
8: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:140 , ALA A:141 , TRP A:142 , HOH A:519 , HOH A:666
BINDING SITE FOR RESIDUE PO4 A 1
2
AC2
SOFTWARE
TYR A:45 , ILE A:48
BINDING SITE FOR RESIDUE PO4 A 2
3
AC3
SOFTWARE
LEU A:157 , LYS A:164
BINDING SITE FOR RESIDUE PO4 B 3
4
AC6
SOFTWARE
HIS A:13 , PHE A:41 , THR A:42 , HOH A:410 , HOH A:627 , HOH A:689 , GLY B:116 , HOH B:597
BINDING SITE FOR RESIDUE PO4 A 362
5
AC7
SOFTWARE
ALA A:79 , ARG A:80 , GLY A:81 , HOH A:449 , ALA B:307 , ARG B:309
BINDING SITE FOR RESIDUE PO4 A 363
6
AC9
SOFTWARE
ALA A:307 , ARG A:309 , ALA B:79 , ARG B:80 , GLY B:81 , HOH B:725
BINDING SITE FOR RESIDUE PO4 B 365
7
BC1
SOFTWARE
SER A:64 , TYR A:150 , ASN A:289 , LYS A:315 , THR A:316 , ASN A:346 , HOH A:433
BINDING SITE FOR RESIDUE PO4 A 364
8
BC2
SOFTWARE
SER A:64 , LEU A:119 , GLN A:120 , ASN A:152 , TYR A:221 , GLY A:317 , ALA A:318 , THR A:319 , GLY A:320 , HOH A:433 , HOH A:441 , HOH A:486 , HOH A:688
BINDING SITE FOR RESIDUE 23C A 365
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_C (A:60-67)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_C
PS00336
Beta-lactamase class-C active site.
AMPC_ECOLI
76-83
1
A:60-67
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2r9wa_ (A:)
1b: SCOP_d2r9wb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
AMPC beta-Lactamase, class C
(85)
Escherichia coli, cephalosporinase [TaxId: 562]
(73)
1a
d2r9wa_
A:
1b
d2r9wb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2r9wA00 (A:4-361)
1b: CATH_2r9wB00 (B:4-361)
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Classes
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Architectures
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(4)
1a
2r9wA00
A:4-361
1b
2r9wB00
B:4-361
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Beta_lactamase_2r9wB01 (B:12-361)
1b: PFAM_Beta_lactamase_2r9wB02 (B:12-361)
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(
)
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(
)
Clan
:
Beta-lactamase
(210)
Family
:
Beta-lactamase
(79)
Escherichia coli (strain K12)
(30)
1a
Beta-lactamase-2r9wB01
B:12-361
1b
Beta-lactamase-2r9wB02
B:12-361
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Chain A
Asymmetric Unit 1
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Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
Biol.Unit 3 (132 KB)
Header - Biol.Unit 3
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