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2R9W
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (132 KB)
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(1)
Title
:
AMPC BETA-LACTAMASE WITH BOUND PHTHALAMIDE INHIBITOR
Authors
:
K. Babaoglu, B. K. Shoichet
Date
:
13 Sep 07 (Deposition) - 15 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Ampc Beta Lactamase, Pthalamide, Antibiotic Resistance, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Babaoglu, A. Simeonov, J. J. Irwin, M. E. Nelson, B. Feng, C. J. Thomas, L. Cancian, M. P. Costi, D. A. Maltby, A. Jadhav, J. Inglese, C. P. Austin, B. K. Shoichet
Comprehensive Mechanistic Analysis Of Hits From High-Throughput And Docking Screens Against Beta-Lactamase.
J. Med. Chem. V. 51 2502 2008
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: 2-[(1R)-1-CARBOXY-2-NAPHTHALEN-1-Y... (23Ca)
1b: 2-[(1R)-1-CARBOXY-2-NAPHTHALEN-1-Y... (23Cb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
2h: PHOSPHATE ION (PO4h)
2i: PHOSPHATE ION (PO4i)
2j: PHOSPHATE ION (PO4j)
View:
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Label:
No.
Name
Count
Type
Full Name
1
23C
2
Ligand/Ion
2-[(1R)-1-CARBOXY-2-NAPHTHALEN-1-YLETHYL]-1,3-DIOXO-2,3-DIHYDRO-1H-ISOINDOLE-5-CARBOXYLIC ACID
2
PO4
10
Ligand/Ion
PHOSPHATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:140 , ALA A:141 , TRP A:142 , HOH A:519 , HOH A:666
BINDING SITE FOR RESIDUE PO4 A 1
02
AC2
SOFTWARE
TYR A:45 , ILE A:48
BINDING SITE FOR RESIDUE PO4 A 2
03
AC3
SOFTWARE
LEU A:157 , LYS A:164
BINDING SITE FOR RESIDUE PO4 B 3
04
AC4
SOFTWARE
TYR B:150 , ASN B:289 , LYS B:315 , THR B:316 , ASN B:346 , HOH B:558
BINDING SITE FOR RESIDUE PO4 B 362
05
AC5
SOFTWARE
PRO B:140 , ALA B:141 , TRP B:142 , ALA B:143
BINDING SITE FOR RESIDUE PO4 B 363
06
AC6
SOFTWARE
HIS A:13 , PHE A:41 , THR A:42 , HOH A:410 , HOH A:627 , HOH A:689 , GLY B:116 , HOH B:597
BINDING SITE FOR RESIDUE PO4 A 362
07
AC7
SOFTWARE
ALA A:79 , ARG A:80 , GLY A:81 , HOH A:449 , ALA B:307 , ARG B:309
BINDING SITE FOR RESIDUE PO4 A 363
08
AC8
SOFTWARE
TRP B:93 , LEU B:157 , LEU B:161 , LYS B:164 , HOH B:587
BINDING SITE FOR RESIDUE PO4 B 364
09
AC9
SOFTWARE
ALA A:307 , ARG A:309 , ALA B:79 , ARG B:80 , GLY B:81 , HOH B:725
BINDING SITE FOR RESIDUE PO4 B 365
10
BC1
SOFTWARE
SER A:64 , TYR A:150 , ASN A:289 , LYS A:315 , THR A:316 , ASN A:346 , HOH A:433
BINDING SITE FOR RESIDUE PO4 A 364
11
BC2
SOFTWARE
SER A:64 , LEU A:119 , GLN A:120 , ASN A:152 , TYR A:221 , GLY A:317 , ALA A:318 , THR A:319 , GLY A:320 , HOH A:433 , HOH A:441 , HOH A:486 , HOH A:688
BINDING SITE FOR RESIDUE 23C A 365
12
BC3
SOFTWARE
SER B:64 , GLN B:120 , TYR B:150 , ASN B:152 , TYR B:221 , ASN B:289 , GLY B:317 , ALA B:318 , THR B:319 , GLY B:320 , HOH B:509 , HOH B:640 , HOH B:658
BINDING SITE FOR RESIDUE 23C B 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_C (A:60-67,B:60-67)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_C
PS00336
Beta-lactamase class-C active site.
AMPC_ECOLI
76-83
2
A:60-67
B:60-67
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2r9wa_ (A:)
1b: SCOP_d2r9wb_ (B:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
AMPC beta-Lactamase, class C
(85)
Escherichia coli, cephalosporinase [TaxId: 562]
(73)
1a
d2r9wa_
A:
1b
d2r9wb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2r9wA00 (A:4-361)
1b: CATH_2r9wB00 (B:4-361)
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Organisms
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(4)
1a
2r9wA00
A:4-361
1b
2r9wB00
B:4-361
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Beta_lactamase_2r9wB01 (B:12-361)
1b: PFAM_Beta_lactamase_2r9wB02 (B:12-361)
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(
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)
Clan
:
Beta-lactamase
(210)
Family
:
Beta-lactamase
(79)
Escherichia coli (strain K12)
(30)
1a
Beta-lactamase-2r9wB01
B:12-361
1b
Beta-lactamase-2r9wB02
B:12-361
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
Biol.Unit 3 (132 KB)
Header - Biol.Unit 3
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