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Getting 'Exon' information from database.
2R9P
Asym. Unit
Info
Asym.Unit (197 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
HUMAN MESOTRYPSIN COMPLEXED WITH BOVINE PANCREATIC TRYPSIN INHIBITOR(BPTI)
Authors
:
M. A. Salameh, A. S. Soares, E. S. Radisky
Date
:
13 Sep 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,I
Biol. Unit 1: A,C,E,G (1x)
Biol. Unit 2: B,D,F,I (1x)
Keywords
:
Human Mesotrypsin, Serine Protease, Bovine Pancreatic Trypsin Inhibitor, Bpti, Alternative Splicing, Calcium, Digestion, Hydrolase, Metal-Binding, Secreted, Sulfation, Zymogen, Pharmaceutical, Protease Inhibitor, Serine Protease Inhibitor, Hydrolase/Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Salameh, A. S. Soares, A. Hockla, E. S. Radisky
Structural Basis For Accelerated Cleavage Of Bovine Pancreatic Trypsin Inhibitor (Bpti) By Human Mesotrypsin.
J. Biol. Chem. V. 283 4115 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 20)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
20
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:132 , THR A:164 , GLN A:165 , HOH A:333 , HOH A:351
BINDING SITE FOR RESIDUE SO4 A 7
02
AC2
SOFTWARE
THR B:164 , GLN B:165 , HOH B:264 , HOH B:349
BINDING SITE FOR RESIDUE SO4 B 6
03
AC3
SOFTWARE
LYS B:169 , GLY B:174 , HOH B:343 , LYS D:169
BINDING SITE FOR RESIDUE SO4 B 13
04
AC4
SOFTWARE
HIS B:217 , TRP B:221A , ARG B:224 , HOH B:335
BINDING SITE FOR RESIDUE SO4 B 14
05
AC5
SOFTWARE
SER B:39 , HIS B:40 , LYS B:74 , ARG B:193 , HOH B:281 , HOH B:336 , ARG F:17 , HOH F:89
BINDING SITE FOR RESIDUE SO4 B 247
06
AC6
SOFTWARE
HOH C:314 , HOH C:328
BINDING SITE FOR RESIDUE SO4 C 1
07
AC7
SOFTWARE
ILE C:73 , ARG C:193 , HOH C:270 , HOH C:299 , HOH C:311 , ARG G:17
BINDING SITE FOR RESIDUE SO4 C 247
08
AC8
SOFTWARE
ASN D:84 , SER D:109 , HOH D:288
BINDING SITE FOR RESIDUE SO4 D 8
09
AC9
SOFTWARE
ALA D:132 , GLN D:165 , HOH D:306
BINDING SITE FOR RESIDUE SO4 D 15
10
BC1
SOFTWARE
PRO D:152 , ASP D:153 , GLU D:154
BINDING SITE FOR RESIDUE SO4 D 247
11
BC2
SOFTWARE
SER D:39 , ARG D:193 , HOH D:259 , HOH D:321 , ARG I:17
BINDING SITE FOR RESIDUE SO4 D 248
12
BC3
SOFTWARE
ARG F:42 , ARG I:20 , TYR I:35 , HOH I:69
BINDING SITE FOR RESIDUE SO4 I 59
13
BC4
SOFTWARE
PHE E:4 , GLU E:7 , LYS E:41 , ARG E:42 , HOH E:63 , HOH E:82 , HOH E:83 , HOH E:91 , HOH E:93
BINDING SITE FOR RESIDUE SO4 E 59
14
BC5
SOFTWARE
ARG E:20 , LYS E:46 , HOH E:72 , ARG G:42 , HOH G:74
BINDING SITE FOR RESIDUE SO4 E 60
15
BC6
SOFTWARE
ARG D:96 , LYS F:41 , ARG F:42 , HOH F:76 , HOH F:78
BINDING SITE FOR RESIDUE SO4 F 59
16
BC7
SOFTWARE
ARG F:20 , TYR F:35 , GLY F:37 , ALA F:40 , HOH F:88
BINDING SITE FOR RESIDUE SO4 F 60
17
BC8
SOFTWARE
LYS F:46 , HOH F:75 , ASP I:3 , ARG I:42 , HOH I:87
BINDING SITE FOR RESIDUE SO4 F 61
18
BC9
SOFTWARE
GLU G:7 , LYS G:41 , ARG G:42 , HOH G:66 , HOH G:87
BINDING SITE FOR RESIDUE SO4 G 59
19
CC1
SOFTWARE
ARG G:20 , TYR G:35 , GLY G:37 , HOH G:90
BINDING SITE FOR RESIDUE SO4 G 60
20
CC2
SOFTWARE
PHE E:4 , ARG E:42 , HOH E:83 , LYS G:46
BINDING SITE FOR RESIDUE SO4 G 61
[
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]
SAPs(SNPs)/Variants
(4, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067459 (A112V, chain A/B/C/D, )
2: VAR_046794 (A127A, chain A/B/C/D, )
3: VAR_059788 (T164S, chain A/B/C/D, )
4: VAR_046795 (Y172C, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067459
A
174
V
TRY3_HUMAN
Polymorphism
11547028
A/B/C/D
A
112
V
2
UniProt
VAR_046794
T
188
A
TRY3_HUMAN
Polymorphism
855581
A/B/C/D
A
127
A
3
UniProt
VAR_059788
T
224
S
TRY3_HUMAN
Polymorphism
1063273
A/B/C/D
T
164
S
4
UniProt
VAR_046795
Y
232
C
TRY3_HUMAN
Polymorphism
1048379
A/B/C/D
Y
172
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 16)
Info
All PROSITE Patterns/Profiles
1: BPTI_KUNITZ_2 (E:5-55,F:5-55,G:5-55,I:5-55)
2: BPTI_KUNITZ_1 (E:33-51,F:33-51,G:33-51,I:33-51)
3: TRYPSIN_DOM (A:16-243,B:16-243,C:16-243,D:16-24...)
4: TRYPSIN_HIS (A:53-58,B:53-58,C:53-58,D:53-58)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BPTI_KUNITZ_2
PS50279
Pancreatic trypsin inhibitor (Kunitz) family profile.
BPT1_BOVIN
40-90
4
E:5-55
F:5-55
G:5-55
I:5-55
2
BPTI_KUNITZ_1
PS00280
Pancreatic trypsin inhibitor (Kunitz) family signature.
BPT1_BOVIN
68-86
4
E:33-51
F:33-51
G:33-51
I:33-51
3
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
TRY3_HUMAN
81-301
4
A:16-243
B:16-243
C:16-243
D:16-243
4
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
TRY3_HUMAN
116-121
4
A:53-58
B:53-58
C:53-58
D:53-58
[
close PROSITE info
]
Exons
(4, 16)
Info
All Exons
Exon 1.5 (A:16-61 (gaps) | B:16-61 (gaps) | ...)
Exon 1.6 (A:61-149 (gaps) | B:61-149 (gaps) ...)
Exon 1.7b (A:149-192 | B:149-192 | C:149-192 ...)
Exon 1.8c (A:193-246 (gaps) | B:193-246 (gaps...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7b
4: Boundary 1.7b/1.8c
5: Boundary 1.8c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000361005
1a
ENSE00001822892
chr9:
33750515-33750725
211
TRY3_HUMAN
1-71
71
0
-
-
1.5
ENST00000361005
5
ENSE00001682759
chr9:
33796641-33796800
160
TRY3_HUMAN
71-124
54
4
A:16-61 (gaps)
B:16-61 (gaps)
C:16-61 (gaps)
D:16-61 (gaps)
46
46
46
46
1.6
ENST00000361005
6
ENSE00001749737
chr9:
33797827-33798080
254
TRY3_HUMAN
124-209
86
4
A:61-149 (gaps)
B:61-149 (gaps)
C:61-149 (gaps)
D:61-149 (gaps)
89
89
89
89
1.7b
ENST00000361005
7b
ENSE00001625216
chr9:
33798484-33798620
137
TRY3_HUMAN
209-254
46
4
A:149-192
B:149-192
C:149-192
D:149-192
46
46
46
46
1.8c
ENST00000361005
8c
ENSE00001859079
chr9:
33799026-33799229
204
TRY3_HUMAN
255-304
50
4
A:193-246 (gaps)
B:193-246 (gaps)
C:193-246 (gaps)
D:193-246 (gaps)
55
55
55
55
[
close EXON info
]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2r9pa_ (A:)
1b: SCOP_d2r9pb_ (B:)
1c: SCOP_d2r9pc_ (C:)
1d: SCOP_d2r9pd_ (D:)
2a: SCOP_d2r9pe_ (E:)
2b: SCOP_d2r9pf_ (F:)
2c: SCOP_d2r9pg_ (G:)
2d: SCOP_d2r9pi_ (I:)
View:
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Classes
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(
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)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Trypsin(ogen)
(500)
Human (Homo sapiens), trypsin IV (brain isoform) [TaxId: 9606]
(7)
1a
d2r9pa_
A:
1b
d2r9pb_
B:
1c
d2r9pc_
C:
1d
d2r9pd_
D:
Class
:
Small proteins
(3458)
Fold
:
BPTI-like
(161)
Superfamily
:
BPTI-like
(161)
Family
:
Small Kunitz-type inhibitors & BPTI-like toxins
(128)
Protein domain
:
Pancreatic trypsin inhibitor, BPTI
(85)
Cow (Bos taurus) [TaxId: 9913]
(85)
2a
d2r9pe_
E:
2b
d2r9pf_
F:
2c
d2r9pg_
G:
2d
d2r9pi_
I:
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2r9pE00 (E:1-58)
1b: CATH_2r9pF00 (F:1-58)
1c: CATH_2r9pG00 (G:1-58)
1d: CATH_2r9pI00 (I:1-58)
2a: CATH_2r9pA01 (A:16-27,A:121-232)
2b: CATH_2r9pB01 (B:16-27,B:121-232)
2c: CATH_2r9pC01 (C:16-27,C:121-232)
2d: CATH_2r9pD01 (D:16-27,D:121-232)
2e: CATH_2r9pA02 (A:28-120,A:233-245)
2f: CATH_2r9pB02 (B:28-120,B:233-245)
2g: CATH_2r9pC02 (C:28-120,C:233-245)
2h: CATH_2r9pD02 (D:28-120,D:233-245)
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)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Factor Xa Inhibitor
(116)
Homologous Superfamily
:
Factor Xa Inhibitor
(116)
Human (Homo sapiens)
(13)
1a
2r9pE00
E:1-58
1b
2r9pF00
F:1-58
1c
2r9pG00
G:1-58
1d
2r9pI00
I:1-58
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
2a
2r9pA01
A:16-27,A:121-232
2b
2r9pB01
B:16-27,B:121-232
2c
2r9pC01
C:16-27,C:121-232
2d
2r9pD01
D:16-27,D:121-232
2e
2r9pA02
A:28-120,A:233-245
2f
2r9pB02
B:28-120,B:233-245
2g
2r9pC02
C:28-120,C:233-245
2h
2r9pD02
D:28-120,D:233-245
[
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]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Trypsin_2r9pD01 (D:16-238)
1b: PFAM_Trypsin_2r9pD02 (D:16-238)
1c: PFAM_Trypsin_2r9pD03 (D:16-238)
1d: PFAM_Trypsin_2r9pD04 (D:16-238)
2a: PFAM_Kunitz_BPTI_2r9pI01 (I:4-56)
2b: PFAM_Kunitz_BPTI_2r9pI02 (I:4-56)
2c: PFAM_Kunitz_BPTI_2r9pI03 (I:4-56)
2d: PFAM_Kunitz_BPTI_2r9pI04 (I:4-56)
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Organisms
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Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Homo sapiens (Human)
(339)
1a
Trypsin-2r9pD01
D:16-238
1b
Trypsin-2r9pD02
D:16-238
1c
Trypsin-2r9pD03
D:16-238
1d
Trypsin-2r9pD04
D:16-238
Clan
:
Protease_inhib
(47)
Family
:
Kunitz_BPTI
(45)
Bos taurus (Bovine)
(33)
2a
Kunitz_BPTI-2r9pI01
I:4-56
2b
Kunitz_BPTI-2r9pI02
I:4-56
2c
Kunitz_BPTI-2r9pI03
I:4-56
2d
Kunitz_BPTI-2r9pI04
I:4-56
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