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2R9A
Asym. Unit
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Asym.Unit (82 KB)
Biol.Unit 1 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN XLF
Authors
:
S. N. Andres, M. S. Junop
Date
:
12 Sep 07 (Deposition) - 01 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Xlf, Cernunnos, Non-Homologous End Joining, Dna Double Strand Break Repair, Alternative Splicing, Disease Mutation, Dna Damage, Dna Repair, Nucleus, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. N. Andres, M. Modesit, C. J. Tsai, G. Chu, M. S. Junop
Crystal Structure Of Human Xlf: A Twist In Nonhomologous Dna End-Joining
Mol. Cell V. 28 1093
(for further references see the
PDB file header
)
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Hetero Components
(1, 18)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_038790 (A14T, chain A/B, )
2: VAR_025704 (R57G, chain A/B, )
3: VAR_025705 (C123R, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_038790
A
14
T
NHEJ1_HUMAN
Polymorphism
34689457
A/B
A
14
T
2
UniProt
VAR_025704
R
57
G
NHEJ1_HUMAN
Disease (NHEJ1-SCID)
---
A/B
R
57
G
3
UniProt
VAR_025705
C
123
R
NHEJ1_HUMAN
Disease (NHEJ1-SCID)
---
A/B
C
123
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(5, 10)
Info
All Exons
Exon 1.4b (A:1-59 | B:1-59)
Exon 1.5a (A:60-130 (gaps) | B:60-130 (gaps))
Exon 1.6 (A:131-177 | B:131-177)
Exon 1.7b (A:177-196 | B:177-196)
Exon 1.11b (A:197-227 | B:197-227)
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All Exon Boundaries
1: Boundary 1.1b/1.4b
2: Boundary 1.4b/1.5a
3: Boundary 1.5a/1.6
4: Boundary 1.6/1.7b
5: Boundary 1.7b/1.11b
6: Boundary 1.11b/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000356853
1b
ENSE00001869065
chr2:
220025575-220025442
134
NHEJ1_HUMAN
-
0
0
-
-
1.4b
ENST00000356853
4b
ENSE00002167216
chr2:
220023084-220022908
177
NHEJ1_HUMAN
1-59
59
2
A:1-59
B:1-59
59
59
1.5a
ENST00000356853
5a
ENSE00001708572
chr2:
220022406-220022194
213
NHEJ1_HUMAN
60-130
71
2
A:60-130 (gaps)
B:60-130 (gaps)
71
71
1.6
ENST00000356853
6
ENSE00001664826
chr2:
220012517-220012379
139
NHEJ1_HUMAN
131-177
47
2
A:131-177
B:131-177
47
47
1.7b
ENST00000356853
7b
ENSE00001631569
chr2:
220011460-220011402
59
NHEJ1_HUMAN
177-196
20
2
A:177-196
B:177-196
20
20
1.11b
ENST00000356853
11b
ENSE00001776599
chr2:
219942928-219942811
118
NHEJ1_HUMAN
197-236
40
2
A:197-227
B:197-227
31
31
1.12
ENST00000356853
12
ENSE00001706214
chr2:
219942086-219941968
119
NHEJ1_HUMAN
236-275
40
0
-
-
1.13f
ENST00000356853
13f
ENSE00001781266
chr2:
219941177-219940043
1135
NHEJ1_HUMAN
276-299
24
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2r9aA02 (A:143-227)
1b: CATH_2r9aB02 (B:143-227)
2a: CATH_2r9aB01 (B:2-141)
2b: CATH_2r9aA01 (A:2-141)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix hairpin bin
(4)
Human (Homo sapiens)
(3)
1a
2r9aA02
A:143-227
1b
2r9aB02
B:143-227
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
Dna Repair Protein Xrcc4; Chain: A, domain 1
(5)
Homologous Superfamily
:
[code=2.170.210.10, no name defined]
(5)
Human (Homo sapiens)
(5)
2a
2r9aB01
B:2-141
2b
2r9aA01
A:2-141
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_XLF_2r9aB01 (B:11-173)
1b: PFAM_XLF_2r9aB02 (B:11-173)
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Clans
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: XLF]
(2)
Family
:
XLF
(2)
Homo sapiens (Human)
(2)
1a
XLF-2r9aB01
B:11-173
1b
XLF-2r9aB02
B:11-173
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Asym.Unit (82 KB)
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