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2R84
Biol. Unit 2
Info
Asym.Unit (134 KB)
Biol.Unit 1 (198 KB)
Biol.Unit 2 (180 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PURP FROM PYROCOCCUS FURIOSUS COMPLEXED WITH AMP AND AICAR
Authors
:
Y. Zhang, R. H. White, S. E. Ealick
Date
:
10 Sep 07 (Deposition) - 04 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Atp-Grasp Superfamily, Unknown Function
(Keyword Search:
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)
Reference
:
Y. Zhang, R. H. White, S. E. Ealick
Crystal Structure And Function Of 5-Formaminoimidazole-4-Carboxamide Ribonucleotide Synthetas From Methanocaldococcus Jannaschii.
Biochemistry V. 47 205 2008
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
2a: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBON... (AMZa)
2b: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBON... (AMZb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
4c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
3
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
AMZ
3
Ligand/Ion
AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
NA
-1
Ligand/Ion
SODIUM ION
[
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Sites
(5, 5)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLU B:98 , GLU B:104 , ILE B:284 , HOH B:795 , HOH B:796 , HOH B:842
BINDING SITE FOR RESIDUE NA B 600
2
AC4
SOFTWARE
HIS B:11 , ARG B:287 , ALA B:290 , HOH B:837
BINDING SITE FOR RESIDUE CL B 601
3
AC7
SOFTWARE
PRO B:116 , ILE B:130 , LYS B:132 , TYR B:142 , GLN B:173 , GLU B:174 , TYR B:175 , GLU B:283 , HOH B:698 , HOH B:700 , HOH B:701 , HOH B:702 , HOH B:767
BINDING SITE FOR RESIDUE AMP B 400
4
AC8
SOFTWARE
SER B:10 , HIS B:11 , GLY B:70 , SER B:71 , HIS B:75 , ARG B:202 , ASN B:232 , ARG B:238 , SER B:240 , ALA B:290 , HOH B:603 , HOH B:606 , HOH B:607 , HOH B:608 , HOH B:609 , HOH B:829
BINDING SITE FOR RESIDUE AMZ B 401
5
BC2
SOFTWARE
TYR B:175 , LEU B:177 , ILE B:213 , PHE B:221 , MET B:223 , HOH B:856
BINDING SITE FOR RESIDUE MPD B 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2r84a2 (A:100-334)
1b: SCOP_d2r84b2 (B:100-334)
2a: SCOP_d2r84a1 (A:1-99)
2b: SCOP_d2r84b1 (B:1-99)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
PurP ATP-binding domain-like
(9)
Protein domain
:
5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
(9)
Pyrococcus furiosus [TaxId: 2261]
(4)
1a
d2r84a2
A:100-334
1b
d2r84b2
B:100-334
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
PurP N-terminal domain-like
(9)
Protein domain
:
5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
(9)
Pyrococcus furiosus [TaxId: 2261]
(4)
2a
d2r84a1
A:1-99
2b
d2r84b1
B:1-99
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2r84A02 (A:88-115,A:178-334)
1b: CATH_2r84B02 (B:88-115,B:178-334)
2a: CATH_2r84A03 (A:116-177)
2b: CATH_2r84B03 (B:116-177)
3a: CATH_2r84A01 (A:1-87)
3b: CATH_2r84B01 (B:1-87)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Pyrococcus furiosus. Organism_taxid: 2261.
(4)
1a
2r84A02
A:88-115,A:178-334
1b
2r84B02
B:88-115,B:178-334
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Pyrococcus furiosus. Organism_taxid: 2261.
(4)
2a
2r84A03
A:116-177
2b
2r84B03
B:116-177
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Pyrococcus furiosus. Organism_taxid: 2261.
(4)
3a
2r84A01
A:1-87
3b
2r84B01
B:1-87
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_DUF1297_2r84B01 (B:150-334)
1b: PFAM_DUF1297_2r84B02 (B:150-334)
2a: PFAM_DUF1246_2r84B03 (B:5-120)
2b: PFAM_DUF1246_2r84B04 (B:5-120)
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Clans
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
ATP-grasp
(83)
Family
:
DUF1297
(6)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(3)
1a
DUF1297-2r84B01
B:150-334
1b
DUF1297-2r84B02
B:150-334
Clan
:
no clan defined [family: DUF1246]
(6)
Family
:
DUF1246
(6)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(3)
2a
DUF1246-2r84B03
B:5-120
2b
DUF1246-2r84B04
B:5-120
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Asym.Unit (134 KB)
Header - Asym.Unit
Biol.Unit 1 (198 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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