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2R84
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (198 KB)
Biol.Unit 2 (180 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PURP FROM PYROCOCCUS FURIOSUS COMPLEXED WITH AMP AND AICAR
Authors
:
Y. Zhang, R. H. White, S. E. Ealick
Date
:
10 Sep 07 (Deposition) - 04 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Atp-Grasp Superfamily, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Y. Zhang, R. H. White, S. E. Ealick
Crystal Structure And Function Of 5-Formaminoimidazole-4-Carboxamide Ribonucleotide Synthetas From Methanocaldococcus Jannaschii.
Biochemistry V. 47 205 2008
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Hetero Components
(5, 11)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
2a: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBON... (AMZa)
2b: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBON... (AMZb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
4b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
4c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
AMZ
2
Ligand/Ion
AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE
3
CL
2
Ligand/Ion
CHLORIDE ION
4
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
NA
2
Ligand/Ion
SODIUM ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:98 , GLU A:104 , ILE A:284 , HOH A:602 , HOH A:621
BINDING SITE FOR RESIDUE NA A 600
02
AC2
SOFTWARE
HIS A:11 , ARG A:202 , ARG A:287 , ALA A:290 , HOH A:894
BINDING SITE FOR RESIDUE CL A 601
03
AC3
SOFTWARE
GLU B:98 , GLU B:104 , ILE B:284 , HOH B:795 , HOH B:796 , HOH B:842
BINDING SITE FOR RESIDUE NA B 600
04
AC4
SOFTWARE
HIS B:11 , ARG B:287 , ALA B:290 , HOH B:837
BINDING SITE FOR RESIDUE CL B 601
05
AC5
SOFTWARE
ILE A:130 , LYS A:132 , TYR A:142 , GLN A:173 , GLU A:174 , TYR A:175 , ARG A:212 , HOH A:610 , HOH A:612 , HOH A:615 , HOH A:616 , HOH A:823 , HOH A:931
BINDING SITE FOR RESIDUE AMP A 400
06
AC6
SOFTWARE
SER A:10 , HIS A:11 , GLY A:70 , SER A:71 , HIS A:75 , ARG A:202 , ASN A:232 , ARG A:238 , SER A:240 , ALA A:290 , HOH A:603 , HOH A:606 , HOH A:607 , HOH A:608 , HOH A:609 , HOH A:781
BINDING SITE FOR RESIDUE AMZ A 401
07
AC7
SOFTWARE
PRO B:116 , ILE B:130 , LYS B:132 , TYR B:142 , GLN B:173 , GLU B:174 , TYR B:175 , GLU B:283 , HOH B:698 , HOH B:700 , HOH B:701 , HOH B:702 , HOH B:767
BINDING SITE FOR RESIDUE AMP B 400
08
AC8
SOFTWARE
SER B:10 , HIS B:11 , GLY B:70 , SER B:71 , HIS B:75 , ARG B:202 , ASN B:232 , ARG B:238 , SER B:240 , ALA B:290 , HOH B:603 , HOH B:606 , HOH B:607 , HOH B:608 , HOH B:609 , HOH B:829
BINDING SITE FOR RESIDUE AMZ B 401
09
AC9
SOFTWARE
TYR A:142 , ASP A:217 , TYR A:227 , HOH A:779
BINDING SITE FOR RESIDUE MPD A 500
10
BC1
SOFTWARE
TYR A:175 , LEU A:177 , ILE A:213 , PHE A:221 , HOH A:834 , HOH A:835
BINDING SITE FOR RESIDUE MPD A 501
11
BC2
SOFTWARE
TYR B:175 , LEU B:177 , ILE B:213 , PHE B:221 , MET B:223 , HOH B:856
BINDING SITE FOR RESIDUE MPD B 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2r84a2 (A:100-334)
1b: SCOP_d2r84b2 (B:100-334)
2a: SCOP_d2r84a1 (A:1-99)
2b: SCOP_d2r84b1 (B:1-99)
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)
(
)
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)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
PurP ATP-binding domain-like
(9)
Protein domain
:
5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
(9)
Pyrococcus furiosus [TaxId: 2261]
(4)
1a
d2r84a2
A:100-334
1b
d2r84b2
B:100-334
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
PurP N-terminal domain-like
(9)
Protein domain
:
5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
(9)
Pyrococcus furiosus [TaxId: 2261]
(4)
2a
d2r84a1
A:1-99
2b
d2r84b1
B:1-99
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2r84A02 (A:88-115,A:178-334)
1b: CATH_2r84B02 (B:88-115,B:178-334)
2a: CATH_2r84A03 (A:116-177)
2b: CATH_2r84B03 (B:116-177)
3a: CATH_2r84A01 (A:1-87)
3b: CATH_2r84B01 (B:1-87)
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Pyrococcus furiosus. Organism_taxid: 2261.
(4)
1a
2r84A02
A:88-115,A:178-334
1b
2r84B02
B:88-115,B:178-334
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Pyrococcus furiosus. Organism_taxid: 2261.
(4)
2a
2r84A03
A:116-177
2b
2r84B03
B:116-177
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Pyrococcus furiosus. Organism_taxid: 2261.
(4)
3a
2r84A01
A:1-87
3b
2r84B01
B:1-87
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_DUF1297_2r84B01 (B:150-334)
1b: PFAM_DUF1297_2r84B02 (B:150-334)
2a: PFAM_DUF1246_2r84B03 (B:5-120)
2b: PFAM_DUF1246_2r84B04 (B:5-120)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
ATP-grasp
(83)
Family
:
DUF1297
(6)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(3)
1a
DUF1297-2r84B01
B:150-334
1b
DUF1297-2r84B02
B:150-334
Clan
:
no clan defined [family: DUF1246]
(6)
Family
:
DUF1246
(6)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(3)
2a
DUF1246-2r84B03
B:5-120
2b
DUF1246-2r84B04
B:5-120
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Asym.Unit (134 KB)
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