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2R6W
Asym. Unit
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Asym.Unit (83 KB)
Biol.Unit 1 (78 KB)
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(1)
Title
:
ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN COMPLEXED TO A SERM
Authors
:
Y. Wang
Date
:
06 Sep 07 (Deposition) - 08 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Estrogen Receptor, Ligand-Binding Domain, Alternative Splicing, Dna-Binding, Lipid-Binding, Metal-Binding, Nucleus, Phosphorylation, Polymorphism, Steroid-Binding, Transcription, Transcription Regulation, Zinc, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Y. Dai, M. J. Chalmers, J. Bruning, K. S. Bramlett, H. E. Osborne, C. Montrose-Rafizadeh, R. J. Barr, Y. Wang, M. Wang, T. P. Burris, J. A. Dodge, P. R. Griffin
Prediction Of The Tissue-Specificity Of Selective Estrogen Receptor Modulators By Using A Single Biochemical Method.
Proc. Natl. Acad. Sci. Usa V. 105 7171 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: [6-HYDROXY-2-(4-HYDROXYPHENYL)-1-B... (LLBa)
1b: [6-HYDROXY-2-(4-HYDROXYPHENYL)-1-B... (LLBb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LLB
2
Ligand/Ion
[6-HYDROXY-2-(4-HYDROXYPHENYL)-1-BENZOTHIEN-3-YL]{4-[2-(4-METHYLPIPERIDIN-1-YL)ETHOXY]PHENYL}METHANONE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:346 , THR A:347 , ALA A:350 , ASP A:351 , GLU A:353 , LEU A:354 , LEU A:387 , ARG A:394 , MET A:421 , ILE A:424 , HIS A:524 , HOH A:577
BINDING SITE FOR RESIDUE LLB A 1
2
AC2
SOFTWARE
LEU B:346 , THR B:347 , ALA B:350 , ASP B:351 , GLU B:353 , LEU B:354 , LEU B:387 , ARG B:394 , PHE B:404 , MET B:421 , ILE B:424 , LEU B:428 , HIS B:524 , LEU B:536 , HOH B:562
BINDING SITE FOR RESIDUE LLB B 1
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_004672 (V364E, chain A/B, )
2: VAR_070072 (Q375H, chain A/B, )
3: VAR_004673 (G400V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_004672
V
364
E
ESR1_HUMAN
Disease (ESTRR)
---
A/B
V
364
E
2
UniProt
VAR_070072
Q
375
H
ESR1_HUMAN
Disease (ESTRR)
---
A/B
Q
375
H
3
UniProt
VAR_004673
G
400
V
ESR1_HUMAN
Unclassified
---
A/B
G
400
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(5, 10)
Info
All Exons
Exon 1.11d (A:306-366 (gaps) | B:306-366 (gaps...)
Exon 1.14 (A:366-412 | B:366-412)
Exon 1.15b (A:412-457 | B:412-457)
Exon 1.16a (A:457-518 | B:457-518 (gaps))
Exon 1.17c (A:518-549 (gaps) | B:518-546 (gaps...)
View:
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All Exon Boundaries
1: Boundary 1.10a/1.11d
2: Boundary 1.11d/1.14
3: Boundary 1.14/1.15b
4: Boundary 1.15b/1.16a
5: Boundary 1.16a/1.17c
6: Boundary 1.17c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4
ENST00000338799
4
ENSE00001789210
chr6:
152125566-152126955
1390
ESR1_HUMAN
-
0
0
-
-
1.6f
ENST00000338799
6f
ENSE00001290999
chr6:
152128978-152129499
522
ESR1_HUMAN
1-151
151
0
-
-
1.9
ENST00000338799
9
ENSE00002163508
chr6:
152163732-152163922
191
ESR1_HUMAN
151-215
65
0
-
-
1.10a
ENST00000338799
10a
ENSE00002172842
chr6:
152201790-152201906
117
ESR1_HUMAN
215-254
40
0
-
-
1.11d
ENST00000338799
11d
ENSE00002178920
chr6:
152265308-152265643
336
ESR1_HUMAN
254-366
113
2
A:306-366 (gaps)
B:306-366 (gaps)
61
61
1.14
ENST00000338799
14
ENSE00000813753
chr6:
152332791-152332929
139
ESR1_HUMAN
366-412
47
2
A:366-412
B:366-412
47
47
1.15b
ENST00000338799
15b
ENSE00000765262
chr6:
152382126-152382259
134
ESR1_HUMAN
412-457
46
2
A:412-457
B:412-457
46
46
1.16a
ENST00000338799
16a
ENSE00000765263
chr6:
152415520-152415703
184
ESR1_HUMAN
457-518
62
2
A:457-518
B:457-518 (gaps)
62
62
1.17c
ENST00000338799
17c
ENSE00001835657
chr6:
152419867-152420188
322
ESR1_HUMAN
518-595
78
2
A:518-549 (gaps)
B:518-546 (gaps)
32
29
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2r6wa_ (A:)
1b: SCOP_d2r6wb_ (B:)
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Protein Domains
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Estrogen receptor alpha
(60)
Human (Homo sapiens) [TaxId: 9606]
(60)
1a
d2r6wa_
A:
1b
d2r6wb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2r6wA00 (A:306-549)
1b: CATH_2r6wB00 (B:306-546)
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(
)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
2r6wA00
A:306-549
1b
2r6wB00
B:306-546
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Hormone_recep_2r6wB01 (B:325-543)
1b: PFAM_Hormone_recep_2r6wB02 (B:325-543)
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-2r6wB01
B:325-543
1b
Hormone_recep-2r6wB02
B:325-543
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Asymmetric Unit 1
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Asym.Unit (83 KB)
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