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2R5T
Asym. Unit
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Asym.Unit (111 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (203 KB)
Biol.Unit 3 (204 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF INACTIVE SERUM AND GLUCOCORTICOID-REGULATED KINASE 1 IN COMPLEX WITH AMP-PNP
Authors
:
B. Zhao, R. Lehr, A. M. Smallwood, T. F. Ho, K. Maley, T. Randall, M. S. Head, K. K. Koretke, C. G. Schnackenberg
Date
:
04 Sep 07 (Deposition) - 09 Sep 08 (Release) - 20 Jan 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Biol. Unit 3: A (2x)
Keywords
:
Agc Protein Kinase, Apoptosis, Atp-Binding, Cytoplasm, Endoplasmic Reticulum, Nucleotide-Binding, Nucleus, Phosphorylation, Serine/Threonine-Protein Kinase, Transferase, Ubl Conjugation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. Zhao, R. Lehr, A. M. Smallwood, T. F. Ho, K. Maley, T. Randall, M. S. Head, K. K. Koretke, C. G. Schnackenberg
Crystal Structure Of The Kinase Domain Of Serum And Glucocorticoid-Regulated Kinase 1 In Complex With Amp Pnp.
Protein Sci. V. 16 2761 2007
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2a: MAGNESIUM ION (MGa)
3a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
ANP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:226
BINDING SITE FOR RESIDUE MG A 600
2
AC2
SOFTWARE
SER A:255 , THR A:256 , HOH A:737 , HOH A:778
BINDING SITE FOR RESIDUE SO4 A 700
3
AC3
SOFTWARE
ILE A:104 , GLY A:107 , SER A:108 , PHE A:109 , ALA A:125 , LYS A:127 , ASP A:177 , ILE A:179 , ARG A:190 , LYS A:224 , GLU A:226 , ASN A:227 , LEU A:229 , THR A:239 , HOH A:789 , HOH A:795 , HOH A:873 , HOH A:907
BINDING SITE FOR RESIDUE ANP A 500
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041071 (V219I, chain A, )
2: VAR_041072 (A342V, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041071
V
219
I
SGK1_HUMAN
Polymorphism
34133418
A
V
219
I
2
UniProt
VAR_041072
A
342
V
SGK1_HUMAN
Polymorphism
55932330
A
A
342
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:104-135)
2: PROTEIN_KINASE_ST (A:218-230)
3: AGC_KINASE_CTER (A:356-378)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
SGK1_HUMAN
104-136
1
A:104-135
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
SGK1_HUMAN
218-230
1
A:218-230
3
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
SGK1_HUMAN
356-431
1
A:356-378
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2r5tA01 (A:88-182)
2a: CATH_2r5tA02 (A:183-372)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2r5tA01
A:88-182
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2r5tA02
A:183-372
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (103 KB)
Header - Biol.Unit 1
Biol.Unit 2 (203 KB)
Header - Biol.Unit 2
Biol.Unit 3 (204 KB)
Header - Biol.Unit 3
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