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2R5S
Asym. Unit
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Asym.Unit (64 KB)
Biol.Unit 1 (30 KB)
Biol.Unit 2 (31 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF A DOMAIN OF PROTEIN VP0806 (UNKNOWN FUNCTION) FROM VIBRIO PARAHAEMOLYTICUS RIMD 2210633
Authors
:
K. Tan, R. Wu, J. Abdullah, L. Freeman, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)
Date
:
04 Sep 07 (Deposition) - 18 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.14
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Apc090868. 1, Protein Vp0806, Vibrio Parahaemolyticus Rimd 2210633, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
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Reference
:
K. Tan, R. Wu, J. Abdullah, L. Freeman, A. Joachimiak
The Crystal Structure Of A Domain Of Protein Vp0806 (Unknow Function) From Vibrio Parahaemolyticus Rimd 2210633.
To Be Published
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
3c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
3d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
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No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
3
MES
4
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU B:237 , ASN B:241 , LYS B:244 , TYR B:284 , HOH B:311
BINDING SITE FOR RESIDUE ACT B 1
2
AC2
SOFTWARE
LEU A:118 , VAL A:121 , SER A:122 , ASP A:149 , ALA A:153 , HOH A:287
BINDING SITE FOR RESIDUE MES A 4
3
AC3
SOFTWARE
LYS A:274 , ARG A:277 , GLN A:278 , TYR A:280 , SER A:281 , HOH A:289 , MES B:285
BINDING SITE FOR RESIDUE EDO A 2
4
AC4
SOFTWARE
HIS A:193 , ALA A:196 , GLN A:228 , VAL A:229 , MES B:2
BINDING SITE FOR RESIDUE EDO A 3
5
AC5
SOFTWARE
EDO A:2 , LYS A:274 , TYR A:280 , LEU B:192 , HIS B:193
BINDING SITE FOR RESIDUE MES B 285
6
AC6
SOFTWARE
EDO A:3 , HIS A:193 , LYS B:274 , TYR B:280
BINDING SITE FOR RESIDUE MES B 2
7
AC7
SOFTWARE
LEU B:118 , LYS B:119 , SER B:122 , ASP B:149
BINDING SITE FOR RESIDUE MES B 3
8
AC8
SOFTWARE
VAL B:245 , ASN B:246 , LEU B:247
BINDING SITE FOR RESIDUE EDO B 286
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2r5sA02 (A:197-284)
1b: CATH_2r5sB02 (B:197-284)
1c: CATH_2r5sA01 (A:114-196)
1d: CATH_2r5sB01 (B:114-196)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.10, no name defined]
(42)
Vibrio parahaemolyticus rimd 2210633. Organism_taxid: 223926. Strain:rimd 2210633.
(1)
1a
2r5sA02
A:197-284
1b
2r5sB02
B:197-284
1c
2r5sA01
A:114-196
1d
2r5sB01
B:114-196
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Pfam Domains
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Asym.Unit (64 KB)
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