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2R5D
Asym. Unit
Info
Asym.Unit (45 KB)
Biol.Unit 1 (38 KB)
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(1)
Title
:
STRUCTURE OF THE GP41 N-TRIMER IN COMPLEX WITH THE HIV ENTRY INHIBITOR PIE7
Authors
:
A. P. Vandemark, B. Welch, A. Heroux, C. P. Hill, M. S. Kay
Date
:
03 Sep 07 (Deposition) - 02 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.66
Chains
:
Asym. Unit : A,B,C,H,K,L
Biol. Unit 1: A,B,C,H,K,L (1x)
Keywords
:
Hiv, Viral Entry, Pie, Viral Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. D. Welch, A. P. Vandemark, A. Heroux, C. P. Hill, M. S. Kay
Potent D-Peptide Inhibitors Of Hiv-1 Entry
Proc. Natl. Acad. Sci. Usa V. 104 16828 2007
[
close entry info
]
Hetero Components
(15, 57)
Info
All Hetero Components
01a: ACETYL GROUP (ACEa)
01b: ACETYL GROUP (ACEb)
01c: ACETYL GROUP (ACEc)
01d: ACETYL GROUP (ACEd)
01e: ACETYL GROUP (ACEe)
01f: ACETYL GROUP (ACEf)
02a: D-ALANINE (DALa)
02b: D-ALANINE (DALb)
02c: D-ALANINE (DALc)
02d: D-ALANINE (DALd)
02e: D-ALANINE (DALe)
02f: D-ALANINE (DALf)
02g: D-ALANINE (DALg)
02h: D-ALANINE (DALh)
02i: D-ALANINE (DALi)
03a: D-ASPARTIC ACID (DASa)
03b: D-ASPARTIC ACID (DASb)
03c: D-ASPARTIC ACID (DASc)
04a: D-CYSTEINE (DCYa)
04b: D-CYSTEINE (DCYb)
04c: D-CYSTEINE (DCYc)
04d: D-CYSTEINE (DCYd)
04e: D-CYSTEINE (DCYe)
04f: D-CYSTEINE (DCYf)
05a: D-GLUTAMIC ACID (DGLa)
05b: D-GLUTAMIC ACID (DGLb)
05c: D-GLUTAMIC ACID (DGLc)
06a: D-GLUTAMINE (DGNa)
06b: D-GLUTAMINE (DGNb)
06c: D-GLUTAMINE (DGNc)
07a: D-LEUCINE (DLEa)
07b: D-LEUCINE (DLEb)
07c: D-LEUCINE (DLEc)
08a: D-LYSINE (DLYa)
08b: D-LYSINE (DLYb)
08c: D-LYSINE (DLYc)
09a: D-PROLINE (DPRa)
09b: D-PROLINE (DPRb)
09c: D-PROLINE (DPRc)
10a: D-TRYPTOPHAN (DTRa)
10b: D-TRYPTOPHAN (DTRb)
10c: D-TRYPTOPHAN (DTRc)
10d: D-TRYPTOPHAN (DTRd)
10e: D-TRYPTOPHAN (DTRe)
10f: D-TRYPTOPHAN (DTRf)
11a: D-TYROSINE (DTYa)
11b: D-TYROSINE (DTYb)
11c: D-TYROSINE (DTYc)
12a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
13a: GLYCEROL (GOLa)
14a: AMINO GROUP (NH2a)
14b: AMINO GROUP (NH2b)
14c: AMINO GROUP (NH2c)
14d: AMINO GROUP (NH2d)
14e: AMINO GROUP (NH2e)
14f: AMINO GROUP (NH2f)
15a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
6
Mod. Amino Acid
ACETYL GROUP
2
DAL
9
Mod. Amino Acid
D-ALANINE
3
DAS
3
Mod. Amino Acid
D-ASPARTIC ACID
4
DCY
6
Mod. Amino Acid
D-CYSTEINE
5
DGL
3
Mod. Amino Acid
D-GLUTAMIC ACID
6
DGN
3
Mod. Amino Acid
D-GLUTAMINE
7
DLE
3
Mod. Amino Acid
D-LEUCINE
8
DLY
3
Mod. Amino Acid
D-LYSINE
9
DPR
3
Mod. Amino Acid
D-PROLINE
10
DTR
6
Mod. Amino Acid
D-TRYPTOPHAN
11
DTY
3
Mod. Amino Acid
D-TYROSINE
12
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
13
GOL
1
Ligand/Ion
GLYCEROL
14
NH2
6
Mod. Amino Acid
AMINO GROUP
15
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
DLY H:1 , GLY H:2 , DAS H:5 , DTY H:6 , HOH H:42
BINDING SITE FOR RESIDUE ACE H 0
02
AC2
SOFTWARE
DLE H:12 , DCY H:13 , DAL H:14 , DAL H:15 , HOH H:34
BINDING SITE FOR RESIDUE NH2 H 16
03
AC3
SOFTWARE
DLY K:1 , GLY K:2
BINDING SITE FOR RESIDUE ACE K 0
04
AC4
SOFTWARE
LEU B:32 , HOH B:470 , DLE K:12 , DCY K:13 , DAL K:14 , DAL K:15
BINDING SITE FOR RESIDUE NH2 K 16
05
AC5
SOFTWARE
GLU B:6 , GLU B:10 , EPE B:430 , DLY L:1
BINDING SITE FOR RESIDUE ACE L 0
06
AC6
SOFTWARE
LEU C:32 , DLE L:12 , DCY L:13 , DAL L:14 , DAL L:15 , HOH L:25
BINDING SITE FOR RESIDUE NH2 L 16
07
AC7
SOFTWARE
LYS A:27 , ARG B:25 , HOH B:457 , HOH B:468 , HOH K:17
BINDING SITE FOR RESIDUE SO4 B 47
08
AC8
SOFTWARE
ALA A:42 , ARG A:43 , LEU A:45 , NH2 A:46 , ACE B:0 , ARG B:1 , MET B:2 , LYS B:3 , GLU B:6 , HOH B:436 , HOH B:469 , ARG C:1 , ACE L:0 , DLY L:1
BINDING SITE FOR RESIDUE EPE B 430
09
AC9
SOFTWARE
LEU A:40 , ARG A:43 , ILE A:44 , HOH A:74 , GLN C:41 , ILE C:44 , LEU C:45 , HOH H:17
BINDING SITE FOR RESIDUE GOL A 47
10
BC1
SOFTWARE
LEU A:29 , LEU A:32 , TRP A:35 , GLY A:36 , GLN A:39 , ILE C:37 , LYS C:38 , GLN C:41 , ACE H:0 , NH2 H:16 , HOH H:17 , HOH H:18 , HOH H:19 , HOH H:20 , HOH H:21 , HOH H:22 , HOH H:24 , HOH H:25 , HOH H:27 , HOH H:28 , HOH H:30 , HOH H:33 , HOH H:35 , HOH H:38
BINDING SITE FOR CHAIN H OF HIV ENTRY INHIBITOR PIE7
11
BC2
SOFTWARE
VAL A:34 , LYS A:38 , GLN A:41 , LEU B:32 , TRP B:35 , LEU B:40 , HOH B:455 , GLU C:20 , ASN C:21 , ALA C:24 , HOH C:62 , HOH C:75 , HOH C:83 , ACE K:0 , NH2 K:16 , HOH K:17 , HOH K:18 , HOH K:19 , HOH K:20 , HOH K:21 , HOH K:22 , HOH K:23 , HOH K:25 , HOH K:29 , HOH K:31
BINDING SITE FOR CHAIN K OF HIV ENTRY INHIBITOR PIE7
12
BC3
SOFTWARE
VAL B:34 , LYS B:38 , GLN B:41 , EPE B:430 , LEU C:29 , LEU C:32 , TRP C:35 , ACE L:0 , NH2 L:16 , HOH L:17 , HOH L:18 , HOH L:19 , HOH L:20 , HOH L:21 , HOH L:22 , HOH L:23 , HOH L:24 , HOH L:28 , HOH L:29 , HOH L:30 , HOH L:31
BINDING SITE FOR CHAIN L OF HIV ENTRY INHIBITOR PIE7
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2r5dA00 (A:1-45)
1b: CATH_2r5dB00 (B:1-45)
1c: CATH_2r5dC00 (C:1-45)
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Classes
(
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(
)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.170, no name defined]
(60)
[unclassified]
(20)
1a
2r5dA00
A:1-45
1b
2r5dB00
B:1-45
1c
2r5dC00
C:1-45
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
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)
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Ligand
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain H
Chain K
Chain L
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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