PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2R4L
Asym. Unit
Info
Asym.Unit (202 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (68 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE LONG-CHAIN FATTY ACID TRANSPORTER FADL MUTANT P34A
Authors
:
E. M. Hearn, D. R. Patel, B. W. Lepore, M. Indic, B. Van Den Berg
Date
:
31 Aug 07 (Deposition) - 16 Sep 08 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Beta Barrel, Outer Membrane Protein, Lipid Transport, Phage Recognition, Transmembrane, Transport, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. M. Hearn, D. R. Patel, B. W. Lepore, M. Indic, B. Van Den Berg
Transmembrane Passage Of Hydrophobic Compounds Through A Protein Channel Wall
Nature V. 458 367 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 6)
Info
All Hetero Components
1a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
1b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
1c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
1d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
1e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
1f: LAURYL DIMETHYLAMINE-N-OXIDE (LDAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LDA
6
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:4 , LEU A:5 , ASN A:6 , GLU A:7 , ILE A:52 , LEU A:104 , ARG A:366 , TRP A:368 , MET A:390 , LEU A:412
BINDING SITE FOR RESIDUE LDA A 505
2
AC2
SOFTWARE
LEU A:104 , THR A:121 , ALA A:153 , ILE A:155 , ARG A:157 , LEU A:200 , ASN A:201 , LEU A:269 , LEU A:304 , GLU A:319 , SER A:360 , ILE A:361
BINDING SITE FOR RESIDUE LDA A 506
3
AC3
SOFTWARE
PHE B:3 , THR B:121 , ALA B:153 , ILE B:155 , ARG B:157 , LEU B:304 , GLU B:319 , SER B:360 , ILE B:361
BINDING SITE FOR RESIDUE LDA B 503
4
AC4
SOFTWARE
GLN B:4 , LEU B:5 , GLU B:7 , ILE B:52 , GLY B:103 , ARG B:366 , TRP B:368 , MET B:390
BINDING SITE FOR RESIDUE LDA B 504
5
AC5
SOFTWARE
THR C:121 , LEU C:123 , ALA C:153 , ILE C:155 , ARG C:157 , PHE C:235 , LEU C:304 , GLU C:319 , SER C:360 , ILE C:361
BINDING SITE FOR RESIDUE LDA C 501
6
AC6
SOFTWARE
GLN C:4 , LEU C:5 , ASN C:6 , GLU C:7 , ILE C:52 , GLY C:103 , LEU C:104 , ARG C:366 , TRP C:368 , MET C:390
BINDING SITE FOR RESIDUE LDA C 502
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2r4lA00 (A:1-421)
1b: CATH_2r4lC00 (C:1-421)
1c: CATH_2r4lB00 (B:1-421)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Porin
(92)
Homologous Superfamily
:
Outer membrane protein transport protein (OMPP1/FadL/TodX)
(14)
Escherichia coli. Organism_taxid: 562.
(8)
1a
2r4lA00
A:1-421
1b
2r4lC00
C:1-421
1c
2r4lB00
B:1-421
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Toluene_X_2r4lC01 (C:1-421)
1b: PFAM_Toluene_X_2r4lC02 (C:1-421)
1c: PFAM_Toluene_X_2r4lC03 (C:1-421)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
MBB
(97)
Family
:
Toluene_X
(12)
Escherichia coli (strain K12)
(12)
1a
Toluene_X-2r4lC01
C:1-421
1b
Toluene_X-2r4lC02
C:1-421
1c
Toluene_X-2r4lC03
C:1-421
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (202 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
Biol.Unit 3 (68 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2R4L
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
