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2R40
Biol. Unit 1
Info
Asym.Unit (87 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (160 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 20E BOUND ECR/USP
Authors
:
D. Moras, I. M. L. Billas, C. Browning
Date
:
30 Aug 07 (Deposition) - 02 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: A,D (2x)
Keywords
:
Nuclear Receptor Ligand-Binding Domain, Anti-Parallel Alpha-Helical Sandwich, Ecdysone Receptor, Ecr, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Browning, E. Martin, C. Loch, J. M. Wurtz, D. Moras, R. H. Stote, A. P. Dejaegere, I. M. L. Billas
Critical Role Of Desolvation In The Binding Of 20-Hydroxyecdysone To The Ecdysone Receptor
J. Biol. Chem. V. 282 32924 2007
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: (2BETA,3BETA,5BETA,22R)-2,3,14,20,... (20Ea)
2a: L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-G... (EPHa)
3a: CITRATE ANION (FLCa)
4a: GLYCEROL (GOLa)
5a: SULFATE ION (SO4a)
View:
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No.
Name
Count
Type
Full Name
1
20E
1
Ligand/Ion
(2BETA,3BETA,5BETA,22R)-2,3,14,20,22,25-HEXAHYDROXYCHOLEST-7-EN-6-ONE
2
EPH
1
Ligand/Ion
L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE
3
FLC
1
Ligand/Ion
CITRATE ANION
4
GOL
1
Ligand/Ion
GLYCEROL
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY D:359 , TYR D:464
BINDING SITE FOR RESIDUE FLC D 9400
2
AC2
SOFTWARE
THR D:291 , ASN D:293 , TYR D:464
BINDING SITE FOR RESIDUE SO4 D 1327
3
AC3
SOFTWARE
GLU D:309 , GLN D:310 , MET D:342 , THR D:343 , THR D:346 , MET D:380 , ARG D:383 , ARG D:387 , LEU D:396 , PHE D:397 , ALA D:398 , TYR D:408 , VAL D:416 , LEU D:420 , ASN D:504 , TRP D:526 , HOH D:9517
BINDING SITE FOR RESIDUE 20E D 9001
4
AC4
SOFTWARE
VAL A:238 , PRO A:239 , PHE A:242 , LEU A:249 , ASN A:287 , LEU A:291 , SER A:335 , GLN A:338 , ALA A:339 , GLY A:340 , VAL A:341 , PHE A:345 , SER A:431 , HIS A:434 , HOH A:613 , HOH A:624
BINDING SITE FOR RESIDUE EPH A 600
5
AC5
SOFTWARE
HOH D:9544
BINDING SITE FOR RESIDUE GOL D 9500
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2r40a_ (A:)
2a: SCOP_d2r40d_ (D:)
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Protein Domains
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Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Tobacco budworm (Heliothis virescens) [TaxId: 7102]
(1)
1a
d2r40a_
A:
Protein domain
:
Ecdysone receptor
(3)
Tobacco budworm (Heliothis virescens) [TaxId: 7102]
(3)
2a
d2r40d_
D:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2r40A00 (A:206-455)
1b: CATH_2r40D00 (D:287-529)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Tobacco budworm (Heliothis virescens)
(4)
1a
2r40A00
A:206-455
1b
2r40D00
D:287-529
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Hormone_recep_2r40D01 (D:315-515)
1b: PFAM_Hormone_recep_2r40A01 (A:228-441)
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(
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Heliothis virescens (Tobacco budworm moth)
(3)
1a
Hormone_recep-2r40D01
D:315-515
1b
Hormone_recep-2r40A01
A:228-441
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Asymmetric Unit 1
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Asym.Unit (87 KB)
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