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2R3Z
Asym. Unit
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Asym.Unit (48 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE IP-10
Authors
:
T. Jabeen, P. Leonard, H. Jamaluddin, K. R. Acharya
Date
:
30 Aug 07 (Deposition) - 12 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ip-10/Cxcl10, Chemokine, Chemotaxis, Inflammatory Response, Attractant
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Jabeen, P. Leonard, H. Jamaluddin, K. R. Acharya
Structure Of Mouse Ip-10, A Chemokine
Acta Crystallogr. , Sect. D V. 64 611 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SMALL_CYTOKINES_CXC (A:9-55,B:9-55,C:9-55,D:9-55)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SMALL_CYTOKINES_CXC
PS00471
Small cytokines (intercrine/chemokine) C-x-C subfamily signature.
CXL10_MOUSE
30-76
4
A:9-55
B:9-55
C:9-55
D:9-55
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Exons
(2, 8)
Info
All Exons
Exon 1.2a (A:1-42 | B:1-42 | C:4-42 | D:4-42)
Exon 1.3a (A:42-68 | B:42-67 | C:42-68 | D:42...)
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All Exon Boundaries
1: Boundary 1.1b/1.2a
2: Boundary 1.2a/1.3a
3: Boundary 1.3a/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENSMUST00000038816
1b
ENSMUSE00000881021
chr5:
92777908-92777780
129
CXL10_MOUSE
1-21
21
0
-
-
1.2a
ENSMUST00000038816
2a
ENSMUSE00000321820
chr5:
92777241-92777115
127
CXL10_MOUSE
21-63
43
4
A:1-42
B:1-42
C:4-42
D:4-42
42
42
39
39
1.3a
ENSMUST00000038816
3a
ENSMUSE00000402325
chr5:
92776920-92776831
90
CXL10_MOUSE
63-93
31
4
A:42-68
B:42-67
C:42-68
D:42-67
27
26
27
26
1.4
ENSMUST00000038816
4
ENSMUSE00000694207
chr5:
92776411-92775664
748
CXL10_MOUSE
93-98
6
0
-
-
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2r3za_ (A:)
1b: SCOP_d2r3zb_ (B:)
1c: SCOP_d2r3zc_ (C:)
1d: SCOP_d2r3zd_ (D:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IL8-like
(118)
Superfamily
:
Interleukin 8-like chemokines
(117)
Family
:
Interleukin 8-like chemokines
(113)
Protein domain
:
automated matches
(22)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d2r3za_
A:
1b
d2r3zb_
B:
1c
d2r3zc_
C:
1d
d2r3zd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2r3zB00 (B:1-67)
1b: CATH_2r3zC00 (C:4-68)
1c: CATH_2r3zA00 (A:1-68)
1d: CATH_2r3zD00 (D:4-67)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
Mouse (Mus musculus)
(2)
1a
2r3zB00
B:1-67
1b
2r3zC00
C:4-68
1c
2r3zA00
A:1-68
1d
2r3zD00
D:4-67
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_IL8_2r3zD01 (D:4-67)
1b: PFAM_IL8_2r3zD02 (D:4-67)
1c: PFAM_IL8_2r3zD03 (D:4-67)
1d: PFAM_IL8_2r3zD04 (D:4-67)
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Clan
:
no clan defined [family: IL8]
(55)
Family
:
IL8
(55)
Mus musculus (Mouse)
(3)
1a
IL8-2r3zD01
D:4-67
1b
IL8-2r3zD02
D:4-67
1c
IL8-2r3zD03
D:4-67
1d
IL8-2r3zD04
D:4-67
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