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Getting 'Exon' information from database.
2R37
Asym. Unit
Info
Asym.Unit (76 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (70 KB)
Biol.Unit 3 (139 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GLUTATHIONE PEROXIDASE 3 (SELENOCYSTEINE TO GLYCINE MUTANT)
Authors
:
E. S. Pilka, K. Guo, O. Gileadi, A. Rojkowa, F. Von Delft, A. C. W. Pike, K. L. Kavanagh, C. Johannson, M. Sundstrom, C. H. Arrowsmith, J. Weige A. M. Edwards, U. Oppermann, Structural Genomics Consortium (Sgc
Date
:
29 Aug 07 (Deposition) - 11 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Biol. Unit 3: A,B (2x)
Keywords
:
Glutathione, Peroxidase, Plasma, Structural Genomics Consortium, Sgc, Oxidoreductase, Secreted, Selenium, Selenocysteine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. S. Pilka, K. Guo, O. Gileadi, A. Rojkowa, F. Von Delft, A. C. W. Pike, K. L. Kavanagh, C. Johannson, M. Sundstrom, C. H. Arrowsmith, J. Weigelt, A. M. Edwards, U. Oppermann
Crystal Structure Of Human Glutathione Peroxidase 3 (Selenocysteine To Glycine Mutant).
To Be Published
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
NA
2
Ligand/Ion
SODIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:73 , GLY A:74 , LEU A:75 , TRP A:181 , ASN A:182
BINDING SITE FOR RESIDUE CL A 1
2
AC2
SOFTWARE
GLY B:73 , GLY B:74 , LEU B:75 , TRP B:181 , ASN B:182
BINDING SITE FOR RESIDUE CL B 2
3
AC3
SOFTWARE
SER A:166 , LEU A:169 , HOH A:300 , HOH A:412 , HOH A:413 , HOH A:417
BINDING SITE FOR RESIDUE NA A 237
4
AC4
SOFTWARE
SER B:166 , LEU B:169 , HOH B:257 , HOH B:381 , HOH B:382 , HOH B:411
BINDING SITE FOR RESIDUE NA B 237
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020943 (F128L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020943
F
128
L
GPX3_HUMAN
Polymorphism
8177445
A/B
F
128
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GLUTATHIONE_PEROXID_1 (A:61-76,B:61-76)
2: GLUTATHIONE_PEROXID_2 (A:97-104,B:97-104)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTATHIONE_PEROXID_1
PS00460
Glutathione peroxidases active site.
GPX3_HUMAN
61-76
2
A:61-76
B:61-76
2
GLUTATHIONE_PEROXID_2
PS00763
Glutathione peroxidases signature 2.
GPX3_HUMAN
97-104
2
A:97-104
B:97-104
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Exons
(4, 8)
Info
All Exons
Exon 1.4a (A:38-81 | B:36-81)
Exon 1.5c (A:81-120 | B:81-120)
Exon 1.6c (A:120-153 | B:120-153)
Exon 1.7d (A:154-226 | B:154-223)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.4a
2: Boundary 1.4a/1.5c
3: Boundary 1.5c/1.6c
4: Boundary 1.6c/1.7d
5: Boundary 1.7d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000388825
1a
ENSE00002107942
chr5:
150400124-150400302
179
GPX3_HUMAN
1-29
29
0
-
-
1.4a
ENST00000388825
4a
ENSE00001504051
chr5:
150404901-150405054
154
GPX3_HUMAN
30-81
52
2
A:38-81
B:36-81
44
46
1.5c
ENST00000388825
5c
ENSE00001504050
chr5:
150406461-150406578
118
GPX3_HUMAN
81-120
40
2
A:81-120
B:81-120
40
40
1.6c
ENST00000388825
6c
ENSE00001702811
chr5:
150406993-150407092
100
GPX3_HUMAN
120-153
34
2
A:120-153
B:120-153
34
34
1.7d
ENST00000388825
7d
ENSE00001504048
chr5:
150407470-150408554
1085
GPX3_HUMAN
154-226
73
2
A:154-226
B:154-223
73
70
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2r37a_ (A:)
1b: SCOP_d2r37b_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
1a
d2r37a_
A:
1b
d2r37b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2r37B00 (B:36-223)
1b: CATH_2r37A00 (A:38-228)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
2r37B00
B:36-223
1b
2r37A00
A:38-228
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_GSHPx_2r37B01 (B:40-153)
1b: PFAM_GSHPx_2r37B02 (B:40-153)
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)
Clan
:
Thioredoxin
(367)
Family
:
GSHPx
(11)
Homo sapiens (Human)
(4)
1a
GSHPx-2r37B01
B:40-153
1b
GSHPx-2r37B02
B:40-153
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Asym.Unit (76 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 2 (70 KB)
Header - Biol.Unit 2
Biol.Unit 3 (139 KB)
Header - Biol.Unit 3
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