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Asym. Unit
Info
Asym.Unit (39 KB)
Biol.Unit 1 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EFFECTOR DOMAIN OF HUMAN PLEXIN B1
Authors
:
Y. Tong, W. Tempel, L. Shen, C. H. Arrowsmith, A. M. Edwards, M. Sundstro J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium
Date
:
27 Aug 07 (Deposition) - 04 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Plexin, Effector Domain, Structural Genomics, Structural Genomics Consortium, Sgc, Glycoprotein, Membrane, Phosphorylation, Receptor, Secreted, Transmembrane, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tong, P. Chugha, P. K. Hota, R. S. Alviani, M. Li, W. Tempel, L. Shen, H. W. Park, M. Buck
Binding Of Rac1, Rnd1, And Rhod To A Novel Rho Gtpase Interaction Motif Destabilizes Dimerization Of The Plexin-B Effector Domain.
J. Biol. Chem. V. 282 37215 2007
[
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
2a: UNKNOWN ATOM OR ION (UNXa)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
2e: UNKNOWN ATOM OR ION (UNXe)
2f: UNKNOWN ATOM OR ION (UNXf)
2g: UNKNOWN ATOM OR ION (UNXg)
2h: UNKNOWN ATOM OR ION (UNXh)
2i: UNKNOWN ATOM OR ION (UNXi)
2j: UNKNOWN ATOM OR ION (UNXj)
2k: UNKNOWN ATOM OR ION (UNXk)
2l: UNKNOWN ATOM OR ION (UNXl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
2
UNX
12
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:1832 , LEU B:1829
BINDING SITE FOR RESIDUE UNX B 202
2
AC2
SOFTWARE
HOH B:8 , SER B:1809
BINDING SITE FOR RESIDUE UNX B 204
3
AC3
SOFTWARE
LEU A:1829 , TRP A:1830 , ARG B:1832
BINDING SITE FOR RESIDUE UNX A 205
4
AC4
SOFTWARE
TRP A:1807 , PRO A:1842 , ALA A:1845
BINDING SITE FOR RESIDUE UNX A 206
5
AC5
SOFTWARE
HOH A:36 , HOH A:59 , THR A:1795 , HOH B:58
BINDING SITE FOR RESIDUE UNX A 207
6
AC6
SOFTWARE
ARG A:1832 , THR A:1835
BINDING SITE FOR RESIDUE UNX A 208
7
AC7
SOFTWARE
PRO B:1798 , ASP B:1799
BINDING SITE FOR RESIDUE UNX B 209
8
AC8
SOFTWARE
LYS B:1781 , PRO B:1800 , ARG B:1801
BINDING SITE FOR RESIDUE UNX B 211
9
AC9
SOFTWARE
PRO A:1842 , ASP A:1843
BINDING SITE FOR RESIDUE UNX A 212
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(4, 8)
Info
All Exons
Exon 1.26c (A:1746-1749 | B:1746-1749)
Exon 1.27b (A:1750-1806 (gaps) | B:1750-1806 (...)
Exon 1.27d (A:1806-1840 | B:1806-1840)
Exon 1.28a (A:1841-1852 | B:1841-1852)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.26a/1.26c
2: Boundary 1.26c/1.27b
3: Boundary 1.27b/1.27d
4: Boundary 1.27d/1.28a
5: Boundary 1.28a/1.29b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3b
ENST00000358536
3b
ENSE00001668057
chr3:
48470872-48470662
211
PLXB1_HUMAN
-
0
0
-
-
1.4a
ENST00000358536
4a
ENSE00001428482
chr3:
48466742-48466690
53
PLXB1_HUMAN
-
0
0
-
-
1.5a
ENST00000358536
5a
ENSE00001206107
chr3:
48466026-48464914
1113
PLXB1_HUMAN
1-369
369
0
-
-
1.6
ENST00000358536
6
ENSE00001080883
chr3:
48464356-48464174
183
PLXB1_HUMAN
370-430
61
0
-
-
1.7a
ENST00000358536
7a
ENSE00001080893
chr3:
48463868-48463740
129
PLXB1_HUMAN
431-473
43
0
-
-
1.8
ENST00000358536
8
ENSE00001080898
chr3:
48463614-48463514
101
PLXB1_HUMAN
474-507
34
0
-
-
1.9
ENST00000358536
9
ENSE00001080910
chr3:
48463215-48463083
133
PLXB1_HUMAN
507-551
45
0
-
-
1.10
ENST00000358536
10
ENSE00001080902
chr3:
48462793-48462637
157
PLXB1_HUMAN
552-604
53
0
-
-
1.11
ENST00000358536
11
ENSE00001080906
chr3:
48462365-48462257
109
PLXB1_HUMAN
604-640
37
0
-
-
1.12
ENST00000358536
12
ENSE00001080876
chr3:
48462182-48462074
109
PLXB1_HUMAN
640-676
37
0
-
-
1.13c
ENST00000358536
13c
ENSE00001326499
chr3:
48461666-48460986
681
PLXB1_HUMAN
677-903
227
0
-
-
1.13g
ENST00000358536
13g
ENSE00001673675
chr3:
48460775-48460653
123
PLXB1_HUMAN
904-944
41
0
-
-
1.14
ENST00000358536
14
ENSE00001644091
chr3:
48460448-48460326
123
PLXB1_HUMAN
945-985
41
0
-
-
1.15
ENST00000358536
15
ENSE00001632794
chr3:
48459951-48459858
94
PLXB1_HUMAN
986-1017
32
0
-
-
1.16b
ENST00000358536
16b
ENSE00001689569
chr3:
48459772-48459600
173
PLXB1_HUMAN
1017-1074
58
0
-
-
1.17
ENST00000358536
17
ENSE00001688877
chr3:
48459471-48459320
152
PLXB1_HUMAN
1075-1125
51
0
-
-
1.18b
ENST00000358536
18b
ENSE00001630248
chr3:
48457860-48457755
106
PLXB1_HUMAN
1125-1160
36
0
-
-
1.19
ENST00000358536
19
ENSE00001685598
chr3:
48457576-48457440
137
PLXB1_HUMAN
1161-1206
46
0
-
-
1.20a
ENST00000358536
20a
ENSE00001604226
chr3:
48457168-48456992
177
PLXB1_HUMAN
1206-1265
60
0
-
-
1.21c
ENST00000358536
21c
ENSE00001725709
chr3:
48456756-48456585
172
PLXB1_HUMAN
1265-1322
58
0
-
-
1.22b
ENST00000358536
22b
ENSE00001726311
chr3:
48456450-48456208
243
PLXB1_HUMAN
1323-1403
81
0
-
-
1.23c
ENST00000358536
23c
ENSE00001731310
chr3:
48455480-48455304
177
PLXB1_HUMAN
1404-1462
59
0
-
-
1.23h
ENST00000358536
23h
ENSE00001788421
chr3:
48455227-48455079
149
PLXB1_HUMAN
1463-1512
50
0
-
-
1.23j
ENST00000358536
23j
ENSE00001633158
chr3:
48454578-48454478
101
PLXB1_HUMAN
1512-1546
35
0
-
-
1.24a
ENST00000358536
24a
ENSE00001749742
chr3:
48454368-48454151
218
PLXB1_HUMAN
1546-1618
73
0
-
-
1.25
ENST00000358536
25
ENSE00001745479
chr3:
48454029-48453851
179
PLXB1_HUMAN
1619-1678
60
0
-
-
1.26a
ENST00000358536
26a
ENSE00001731741
chr3:
48453713-48453647
67
PLXB1_HUMAN
1678-1700
23
0
-
-
1.26c
ENST00000358536
26c
ENSE00001740702
chr3:
48453418-48453272
147
PLXB1_HUMAN
1701-1749
49
2
A:1746-1749
B:1746-1749
4
4
1.27b
ENST00000358536
27b
ENSE00001769186
chr3:
48452445-48452277
169
PLXB1_HUMAN
1750-1806
57
2
A:1750-1806 (gaps)
B:1750-1806 (gaps)
57
57
1.27d
ENST00000358536
27d
ENSE00001752233
chr3:
48451967-48451864
104
PLXB1_HUMAN
1806-1840
35
2
A:1806-1840
B:1806-1840
35
35
1.28a
ENST00000358536
28a
ENSE00001597624
chr3:
48451789-48451705
85
PLXB1_HUMAN
1841-1869
29
2
A:1841-1852
B:1841-1852
12
12
1.29b
ENST00000358536
29b
ENSE00001747202
chr3:
48451486-48451314
173
PLXB1_HUMAN
1869-1926
58
0
-
-
1.30a
ENST00000358536
30a
ENSE00001685743
chr3:
48451139-48450979
161
PLXB1_HUMAN
1927-1980
54
0
-
-
1.30d
ENST00000358536
30d
ENSE00001746046
chr3:
48450884-48450737
148
PLXB1_HUMAN
1980-2029
50
0
-
-
1.31a
ENST00000358536
31a
ENSE00001798246
chr3:
48448498-48448434
65
PLXB1_HUMAN
2030-2051
22
0
-
-
1.32a
ENST00000358536
32a
ENSE00001737780
chr3:
48448305-48448230
76
PLXB1_HUMAN
2051-2076
26
0
-
-
1.33b
ENST00000358536
33b
ENSE00001624889
chr3:
48447205-48447131
75
PLXB1_HUMAN
2077-2101
25
0
-
-
1.34c
ENST00000358536
34c
ENSE00001862726
chr3:
48445997-48445263
735
PLXB1_HUMAN
2102-2135
34
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2r2oA00 (A:1746-1852)
1b: CATH_2r2oB00 (B:1746-1852)
View:
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(
)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
2r2oA00
A:1746-1852
1b
2r2oB00
B:1746-1852
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Plexin_cytopl_2r2oB01 (B:1746-1852)
1b: PFAM_Plexin_cytopl_2r2oB02 (B:1746-1852)
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(
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(
)
(
)
Clan
:
no clan defined [family: Plexin_cytopl]
(5)
Family
:
Plexin_cytopl
(5)
Homo sapiens (Human)
(5)
1a
Plexin_cytopl-2r2oB01
B:1746-1852
1b
Plexin_cytopl-2r2oB02
B:1746-1852
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Asym.Unit (39 KB)
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