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2R26
Asym. Unit
Info
Asym.Unit (266 KB)
Biol.Unit 1 (132 KB)
Biol.Unit 2 (133 KB)
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(1)
Title
:
THE STRUCTURE OF THE TERNARY COMPLEX OF CARBOXYMETHYL COENZYME A AND OXALATEACETATE WITH CITRATE SYNTHASE FROM THE THERMOPHILIC ARCHAEONTHERMOPLASMA ACIDOPHILUM
Authors
:
C. Lehmann
Date
:
24 Aug 07 (Deposition) - 12 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Citrate Synthase, Oxaloacetate, Carboxymethyl Coa, Ec 2. 3. 3. 1, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Lehmann, T. E. Ellenberger, L. C. Kurz
The Structure Of The Ternary Complex Of Carboxymethyl Coenzyme A And Oxalateacetate With Citrate Synthase From The Thermophilic Archaeonthermoplasma Acidophilum
To Be Published 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CARBOXYMETHYL COENZYME *A (CMCa)
1b: CARBOXYMETHYL COENZYME *A (CMCb)
1c: CARBOXYMETHYL COENZYME *A (CMCc)
1d: CARBOXYMETHYL COENZYME *A (CMCd)
2a: OXALOACETATE ION (OAAa)
2b: OXALOACETATE ION (OAAb)
2c: OXALOACETATE ION (OAAc)
2d: OXALOACETATE ION (OAAd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CMC
4
Ligand/Ion
CARBOXYMETHYL COENZYME *A
2
OAA
4
Ligand/Ion
OXALOACETATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:364 , HIS B:187 , PRO B:190 , HIS B:222 , HIS B:262 , ARG B:271 , PHE B:340 , ARG B:344 , HOH B:703 , HOH B:705
BINDING SITE FOR RESIDUE OAA B 500
2
AC2
SOFTWARE
HIS A:187 , PRO A:190 , HIS A:222 , HIS A:262 , ARG A:271 , PHE A:340 , ARG A:344 , HOH A:782 , ARG B:364
BINDING SITE FOR RESIDUE OAA A 501
3
AC3
SOFTWARE
HIS C:187 , PRO C:190 , HIS C:222 , HIS C:262 , ARG C:271 , PHE C:340 , ARG C:344 , HOH C:715 , HOH C:756 , ARG D:364
BINDING SITE FOR RESIDUE OAA C 502
4
AC4
SOFTWARE
ARG C:364 , HIS D:187 , PRO D:190 , HIS D:222 , HIS D:262 , ARG D:271 , PHE D:340 , ARG D:344 , HOH D:714 , HOH D:751
BINDING SITE FOR RESIDUE OAA D 503
5
AC5
SOFTWARE
ARG A:361 , LEU B:221 , HIS B:222 , GLY B:223 , ALA B:225 , ARG B:256 , LEU B:257 , GLY B:259 , PHE B:260 , GLY B:261 , HIS B:262 , ARG B:263 , ILE B:312 , ASN B:315 , ASP B:317 , PHE B:340 , HOH B:706 , HOH B:714 , HOH B:756 , HOH B:765
BINDING SITE FOR RESIDUE CMC B 700
6
AC6
SOFTWARE
LEU A:221 , HIS A:222 , GLY A:223 , ALA A:225 , ARG A:256 , LEU A:257 , GLY A:259 , PHE A:260 , GLY A:261 , HIS A:262 , ARG A:263 , ASN A:315 , ASP A:317 , PHE A:340 , HOH A:839 , HOH A:852 , HOH A:854 , HOH A:936 , HOH A:941 , ARG B:361
BINDING SITE FOR RESIDUE CMC A 701
7
AC7
SOFTWARE
LEU C:221 , HIS C:222 , ALA C:225 , ARG C:256 , LEU C:257 , MET C:258 , GLY C:259 , PHE C:260 , GLY C:261 , HIS C:262 , ARG C:263 , ILE C:312 , ASN C:315 , ASP C:317 , HOH C:784 , HOH C:810 , HOH C:834 , HOH C:849 , HOH C:884 , ARG D:361
BINDING SITE FOR RESIDUE CMC C 702
8
AC8
SOFTWARE
LYS B:151 , ARG C:361 , LEU D:221 , HIS D:222 , GLY D:223 , ALA D:225 , ARG D:256 , LEU D:257 , GLY D:259 , PHE D:260 , GLY D:261 , HIS D:262 , ARG D:263 , LYS D:310 , ILE D:312 , ASN D:315 , ASP D:317 , PHE D:340 , HOH D:740 , HOH D:777 , HOH D:799 , HOH D:818 , HOH D:945
BINDING SITE FOR RESIDUE CMC D 703
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CITRATE_SYNTHASE (A:259-271,B:259-271,C:259-271,D:25...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CITRATE_SYNTHASE
PS00480
Citrate synthase signature.
CISY_THEAC
260-272
4
A:259-271
B:259-271
C:259-271
D:259-271
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2r26a_ (A:)
1b: SCOP_d2r26c_ (C:)
1c: SCOP_d2r26d_ (D:)
1d: SCOP_d2r26b_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Citrate synthase
(43)
Superfamily
:
Citrate synthase
(43)
Family
:
Citrate synthase
(38)
Protein domain
:
automated matches
(6)
Thermoplasma acidophilum [TaxId: 2303]
(3)
1a
d2r26a_
A:
1b
d2r26c_
C:
1c
d2r26d_
D:
1d
d2r26b_
B:
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Citrate_synt_2r26D01 (D:9-365)
1b: PFAM_Citrate_synt_2r26D02 (D:9-365)
1c: PFAM_Citrate_synt_2r26D03 (D:9-365)
1d: PFAM_Citrate_synt_2r26D04 (D:9-365)
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Clan
:
no clan defined [family: Citrate_synt]
(9)
Family
:
Citrate_synt
(9)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(1)
1a
Citrate_synt-2r26D01
D:9-365
1b
Citrate_synt-2r26D02
D:9-365
1c
Citrate_synt-2r26D03
D:9-365
1d
Citrate_synt-2r26D04
D:9-365
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Asym.Unit (266 KB)
Header - Asym.Unit
Biol.Unit 1 (132 KB)
Header - Biol.Unit 1
Biol.Unit 2 (133 KB)
Header - Biol.Unit 2
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