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2R1P
Biol. Unit 1
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Asym.Unit (63 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (113 KB)
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Title
:
OPDA FROM AGROBACTERIUM RADIOBACTER WITH BOUND PRODUCT DIETHYL THIOPHOSPHATE FROM CO-CRYSTALLISATION WITH TETRAETHYL DITHIOPYROPHOSPHATE- 1.8 A
Authors
:
D. L. Ollis, C. J. Jackson, J. L. Foo, H. K. Kim, P. D. Carr, J. W. Liu, G. Salem
Date
:
23 Aug 07 (Deposition) - 12 Feb 08 (Release) - 23 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Phosphotriesterase, Opda, Metalloenzyme, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Jackson, J. L. Foo, H. K. Kim, P. D. Carr, J. W. Liu, G. Salem, D. L. Ollis
In Crystallo Capture Of A Michaelis Complex And Product-Binding Modes Of A Bacterial Phosphotriesterase
J. Mol. Biol. V. 375 1189 2008
(for further references see the
PDB file header
)
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
2a: O,O-DIETHYL HYDROGEN THIOPHOSPHATE (DPJa)
3a: 1,2-ETHANEDIOL (EDOa)
4a: FE (II) ION (FE2a)
5a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
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No.
Name
Count
Type
Full Name
1
CO
-1
Ligand/Ion
COBALT (II) ION
2
DPJ
1
Ligand/Ion
O,O-DIETHYL HYDROGEN THIOPHOSPHATE
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
FE2
1
Ligand/Ion
FE (II) ION
5
KCX
1
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
DPJ A:1 , HIS A:55 , HIS A:57 , KCX A:169 , ASP A:301 , CO A:801
BINDING SITE FOR RESIDUE FE2 A 800
2
AC2
SOFTWARE
DPJ A:1 , KCX A:169 , HIS A:201 , HIS A:230 , FE2 A:800
BINDING SITE FOR RESIDUE CO A 801
3
AC3
SOFTWARE
HIS A:55 , HIS A:57 , TRP A:131 , KCX A:169 , HIS A:201 , HIS A:230 , ARG A:254 , TYR A:257 , LEU A:271 , ASP A:301 , EDO A:701 , FE2 A:800 , CO A:801
BINDING SITE FOR RESIDUE DPJ A 1
4
AC4
SOFTWARE
DPJ A:1 , TRP A:131 , SER A:308
BINDING SITE FOR RESIDUE EDO A 701
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
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1a: SCOP_d2r1pa_ (A:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
Phosphotriesterase-like
(43)
Protein domain
:
Phosphotriesterase (parathion hydrolase, PTE)
(39)
Agrobacterium tumefaciens [TaxId: 358]
(13)
1a
d2r1pa_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2r1pA00 (A:34-361)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Metal-dependent hydrolases
(190)
Agrobacterium tumefaciens. Organism_taxid: 358.
(9)
1a
2r1pA00
A:34-361
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_PTE_2r1pA01 (A:44-359)
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Clan
:
Amidohydrolase
(126)
Family
:
PTE
(19)
Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)
(5)
1a
PTE-2r1pA01
A:44-359
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (63 KB)
Header - Asym.Unit
Biol.Unit 1 (58 KB)
Header - Biol.Unit 1
Biol.Unit 2 (113 KB)
Header - Biol.Unit 2
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