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2R0V
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (53 KB)
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(1)
Title
:
STRUCTURE OF THE RSC4 TANDEM BROMODOMAIN ACETYLATED AT K25
Authors
:
A. P. Vandemark, M. M. Kasten, E. Ferris, A. Heroux, C. P. Hill, B. R. Cairns
Date
:
21 Aug 07 (Deposition) - 30 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Bromodomain, Chromatin, Remodeler, Rsc, Histone, Acetylation, Transcription, Chromatin Regulator, Nucleus, Phosphorylation, Transcription Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. P. Vandemark, M. M. Kasten, E. Ferris, A. Heroux, C. P. Hill, B. R. Cairns
Autoregulation Of The Rsc4 Tandem Bromodomain By Gcn5 Acetylation.
Mol. Cell V. 27 817 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: N(6)-ACETYLLYSINE (ALYa)
1b: N(6)-ACETYLLYSINE (ALYb)
1c: N(6)-ACETYLLYSINE (ALYc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
View:
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No.
Name
Count
Type
Full Name
1
ALY
3
Mod. Amino Acid
N(6)-ACETYLLYSINE
2
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:177 , ASN A:180 , ARG A:303 , HOH A:399 , HOH A:468 , HOH B:455
BINDING SITE FOR RESIDUE SO4 A 341
2
AC2
SOFTWARE
HIS A:177 , LYS A:181
BINDING SITE FOR RESIDUE SO4 A 342
3
AC3
SOFTWARE
GLU A:47 , TYR A:251 , ILE A:254 , ASN A:286 , ILE A:289 , GLN A:290 , HOH A:480
BINDING SITE FOR RESIDUE SO4 A 343
4
AC4
SOFTWARE
HIS C:89 , PRO C:90 , GLN C:91 , TYR C:92 , TYR C:133
BINDING SITE FOR RESIDUE SO4 C 341
5
AC5
SOFTWARE
ALY C:25 , HIS C:89
BINDING SITE FOR RESIDUE SO4 C 342
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: BROMODOMAIN_2 (A:72-141,B:72-141,C:72-141|A:205-2...)
2: BROMODOMAIN_1 (A:77-133,B:77-133,C:77-133|A:210-2...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BROMODOMAIN_2
PS50014
Bromodomain profile.
RSC4_YEAST
72-141
205-275
6
A:72-141
B:72-141
C:72-141
A:205-275
B:205-275
C:205-275
2
BROMODOMAIN_1
PS00633
Bromodomain signature.
RSC4_YEAST
77-133
210-267
6
A:77-133
B:77-133
C:77-133
A:210-267
B:210-267
C:210-267
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Exons
(1, 3)
Info
All Exons
Exon 1.1 (A:19-311 | B:23-310 (gaps) | C:23-...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YKR008W
1
YKR008W.1
XI:451844-453721
1878
RSC4_YEAST
1-625
625
3
A:19-311
B:23-310 (gaps)
C:23-313
293
288
291
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2r0vA01 (A:46-159)
1b: CATH_2r0vA02 (A:160-304)
1c: CATH_2r0vB02 (B:160-304)
1d: CATH_2r0vC02 (C:160-304)
1e: CATH_2r0vB01 (B:46-159)
1f: CATH_2r0vC01 (C:46-159)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Histone Acetyltransferase; Chain A
(22)
Homologous Superfamily
:
Histone Acetyltransferase; Chain A
(22)
Baker's yeast (Saccharomyces cerevisiae)
(4)
1a
2r0vA01
A:46-159
1b
2r0vA02
A:160-304
1c
2r0vB02
B:160-304
1d
2r0vC02
C:160-304
1e
2r0vB01
B:46-159
1f
2r0vC01
C:46-159
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Bromodomain_2r0vC01 (C:201-280)
1b: PFAM_Bromodomain_2r0vC02 (C:201-280)
1c: PFAM_Bromodomain_2r0vC03 (C:201-280)
1d: PFAM_Bromodomain_2r0vC04 (C:201-280)
1e: PFAM_Bromodomain_2r0vC05 (C:201-280)
1f: PFAM_Bromodomain_2r0vC06 (C:201-280)
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Clan
:
no clan defined [family: Bromodomain]
(56)
Family
:
Bromodomain
(56)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(4)
1a
Bromodomain-2r0vC01
C:201-280
1b
Bromodomain-2r0vC02
C:201-280
1c
Bromodomain-2r0vC03
C:201-280
1d
Bromodomain-2r0vC04
C:201-280
1e
Bromodomain-2r0vC05
C:201-280
1f
Bromodomain-2r0vC06
C:201-280
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Asym.Unit (161 KB)
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