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2R0T
Asym. Unit
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Asym.Unit (135 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GDP-4-KETO-6-DEOXYMANNOSE-3-DEHYDRATASE WITH A TRAPPED PLP-GLUTAMATE GEMINAL DIAMINE
Authors
:
P. D. Cook, H. M. Holden
Date
:
21 Aug 07 (Deposition) - 18 Dec 07 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Colitose, X-Ray Strucutre, Aspartate Aminotransferase, Geminal Diamine, Pyridoxal Phosphate, Transferase
(Keyword Search:
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Reference
:
P. D. Cook, H. M. Holden
A Structural Study Of Gdp-4-Keto-6-Deoxy-D-Mannose-3-Dehydratase: Caught In The Act Of Geminal Diamine Formation
Biochemistry V. 46 14215 2007
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Hetero Components
(1, 2)
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All Hetero Components
1a: N-({3-HYDROXY-2-METHYL-5-[(PHOSPHO... (PGUa)
1b: N-({3-HYDROXY-2-METHYL-5-[(PHOSPHO... (PGUb)
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1
PGU
2
Ligand/Ion
N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-GLUTAMIC ACID
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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1
AC1
SOFTWARE
GLY A:56 , SER A:57 , TRP A:88 , ASP A:159 , CYS A:161 , GLU A:162 , SER A:183 , PHE A:185 , LYS A:188 , ARG A:331 , HOH A:508 , HOH A:516 , HIS B:215 , TRP B:217 , ASN B:248 , ARG B:250
BINDING SITE FOR RESIDUE PGU A 500
2
AC2
SOFTWARE
HIS A:215 , ASN A:248 , ARG A:250 , SER B:55 , GLY B:56 , SER B:57 , TRP B:88 , THR B:90 , ASP B:159 , CYS B:161 , GLU B:162 , SER B:183 , PHE B:185 , LYS B:188 , ARG B:331 , HOH B:622
BINDING SITE FOR RESIDUE PGU B 500
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CATH Domains
(2, 4)
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all CATH domains
1a: CATH_2r0tA01 (A:3-264)
1b: CATH_2r0tB01 (B:3-264)
2a: CATH_2r0tA02 (A:265-388)
2b: CATH_2r0tB02 (B:265-388)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Escherichia coli. Organism_taxid: 562. Strain: o55:h7 strain 5a.
(1)
1a
2r0tA01
A:3-264
1b
2r0tB01
B:3-264
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Escherichia coli. Organism_taxid: 562. Strain: o55:h7 strain 5a.
(1)
2a
2r0tA02
A:265-388
2b
2r0tB02
B:265-388
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Pfam Domains
(1, 2)
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all PFAM domains
1a: PFAM_DegT_DnrJ_EryC1_2r0tB01 (B:10-388)
1b: PFAM_DegT_DnrJ_EryC1_2r0tB02 (B:10-388)
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Clan
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PLP_aminotran
(240)
Family
:
DegT_DnrJ_EryC1
(4)
Escherichia coli
(1)
1a
DegT_DnrJ_EryC1-2r0tB01
B:10-388
1b
DegT_DnrJ_EryC1-2r0tB02
B:10-388
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