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2R0D
Biol. Unit 2
Info
Asym.Unit (130 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AUTOINHIBITED FORM OF GRP1 ARF GTPASE EXCHANGE FACTOR
Authors
:
J. P. Dinitto, A. Delprato, M. T. Gabe Lee, T. C. Cronin, S. Huang, A. Gui M. P. Czech, D. G. Lambright
Date
:
18 Aug 07 (Deposition) - 04 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Grp1, General Receptor For Phosphoinositides, Arf Gtpase, Exchange Factor, Pip3, 3-Phosphoinositide, Guanine-Nucleotide Releasing Factor, Signaling Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. P. Dinitto, A. Delprato, M. T. Gabe Lee, T. C. Cronin, S. Huang, A. Guilherme, M. P. Czech, D. G. Lambright
Structural Basis And Mechanism Of Autoregulation In 3-Phosphoinositide-Dependent Grp1 Family Arf Gtpase Exchang Factors.
Mol. Cell V. 28 569 2007
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: INOSITOL-(1,3,4,5)-TETRAKISPHOSPHA... (4IPa)
1b: INOSITOL-(1,3,4,5)-TETRAKISPHOSPHA... (4IPb)
2a: DI(HYDROXYETHYL)ETHER (PEGa)
2b: DI(HYDROXYETHYL)ETHER (PEGb)
2c: DI(HYDROXYETHYL)ETHER (PEGc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
4IP
1
Ligand/Ion
INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
2
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC8 (SOFTWARE)
6: AC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HOH A:596 , HIS B:55 , HIS B:56 , HIS B:57 , HOH B:410 , HOH B:504 , HOH B:512 , HOH B:530
BINDING SITE FOR RESIDUE SO4 B 1
2
AC3
SOFTWARE
HIS A:57 , HIS A:58 , HIS A:60 , LEU B:272 , LYS B:323 , PRO B:324
BINDING SITE FOR RESIDUE SO4 A 400
3
AC4
SOFTWARE
ARG A:217 , HOH A:525 , HOH A:716 , HIS B:60
BINDING SITE FOR RESIDUE SO4 A 401
4
AC6
SOFTWARE
LYS B:107 , LYS B:273 , GLY B:275 , GLY B:276 , ARG B:277 , VAL B:278 , THR B:280 , LYS B:282 , ARG B:284 , TYR B:295 , ARG B:305 , LYS B:343 , ASN B:354 , HIS B:355 , HOH B:407 , HOH B:408 , HOH B:418 , HOH B:440 , HOH B:475 , HOH B:491 , HOH B:496 , HOH B:506 , HOH B:524
BINDING SITE FOR RESIDUE 4IP B 400
5
AC8
SOFTWARE
GLY A:269 , TRP A:270 , ARG A:283 , TRP A:285 , GLY B:54
BINDING SITE FOR RESIDUE PEG A 404
6
AC9
SOFTWARE
LYS B:340 , CYS B:342
BINDING SITE FOR RESIDUE PEG B 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: SEC7 (B:63-246)
2: PH_DOMAIN (B:264-380)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SEC7
PS50190
SEC7 domain profile.
CYH3_MOUSE
59-246
1
-
B:63-246
2
PH_DOMAIN
PS50003
PH domain profile.
CYH3_MOUSE
264-380
1
-
B:264-380
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2r0da1 (A:65-252)
1b: SCOP_d2r0db1 (B:65-252)
2a: SCOP_d2r0da2 (A:266-391)
2b: SCOP_d2r0db2 (B:266-391)
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Classes
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Sec7 domain
(22)
Family
:
Sec7 domain
(14)
Protein domain
:
Cytohesin-1/b2-1
(3)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d2r0da1
A:65-252
1b
d2r0db1
B:65-252
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Grp1
(6)
Mouse (Mus musculus) [TaxId: 10090]
(6)
2a
d2r0da2
A:266-391
2b
d2r0db2
B:266-391
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_PH_2r0dB01 (B:265-380)
1b: PFAM_PH_2r0dB02 (B:265-380)
2a: PFAM_Sec7_2r0dB03 (B:63-248)
2b: PFAM_Sec7_2r0dB04 (B:63-248)
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Clan
:
PH
(111)
Family
:
PH
(71)
Mus musculus (Mouse)
(20)
1a
PH-2r0dB01
B:265-380
1b
PH-2r0dB02
B:265-380
Clan
:
no clan defined [family: Sec7]
(12)
Family
:
Sec7
(12)
Mus musculus (Mouse)
(2)
2a
Sec7-2r0dB03
B:63-248
2b
Sec7-2r0dB04
B:63-248
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Chain B
Asymmetric Unit 1
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Asym.Unit (130 KB)
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