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2R09
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AUTOINHIBITED FORM OF GRP1 ARF GTPASE EXCHANGE FACTOR
Authors
:
J. P. Dinitto, A. Delprato, M. T. Gabe Lee, T. C. Cronin, S. Huang, A. Gui M. P. Czech, D. G. Lambright
Date
:
17 Aug 07 (Deposition) - 04 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Autoinhibition, Grp1, Pip3, Arf, 3-Phosphoinositide, Pleckstrin Homology Domain, Guanine-Nucleotide Releasing Factor, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Dinitto, A. Delprato, M. T. Gabe Lee, T. C. Cronin, S. Huang, A. Guilherme, M. P. Czech, D. G. Lambright
Structural Basis And Mechanism Of Autoregulation In 3-Phosphoinositide-Dependent Grp1 Family Arf Gtpase Exchang Factors.
Mol. Cell V. 28 569 2007
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Hetero Components
(5, 27)
Info
All Hetero Components
1a: INOSITOL-(1,3,4,5)-TETRAKISPHOSPHA... (4IPa)
1b: INOSITOL-(1,3,4,5)-TETRAKISPHOSPHA... (4IPb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
3a: 3,6,9,12,15,18,21,24-OCTAOXAHEXACO... (PE5a)
4a: TRIETHYLENE GLYCOL (PGEa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4IP
2
Ligand/Ion
INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
2
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
3
PE5
1
Ligand/Ion
3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
4
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
5
SO4
7
Ligand/Ion
SULFATE ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:57 , HIS A:58 , HIS A:60 , HOH A:695 , LEU B:272 , LYS B:323 , PRO B:324
BINDING SITE FOR RESIDUE SO4 A 1
02
AC2
SOFTWARE
GLN A:147 , ARG A:150 , SER A:242 , GLN A:337 , HOH A:448 , HOH A:498 , HOH A:534
BINDING SITE FOR RESIDUE SO4 A 400
03
AC3
SOFTWARE
ARG A:210 , HOH A:440 , HOH A:517 , HOH A:741 , HOH A:760 , HOH A:799 , HIS B:55 , HIS B:56 , HIS B:57
BINDING SITE FOR RESIDUE SO4 A 401
04
AC4
SOFTWARE
ARG A:217 , HOH A:557 , HOH A:599 , HOH A:788 , HIS B:60
BINDING SITE FOR RESIDUE SO4 A 402
05
AC5
SOFTWARE
LYS A:282 , ARG A:284 , HOH A:693
BINDING SITE FOR RESIDUE SO4 A 403
06
AC6
SOFTWARE
ASP A:301 , LYS A:302 , GLU A:303 , HOH A:569 , HOH A:774
BINDING SITE FOR RESIDUE SO4 A 404
07
AC7
SOFTWARE
TRP A:270 , PRO A:363 , GLY B:54 , HOH B:535 , HOH B:578 , HOH B:616
BINDING SITE FOR RESIDUE SO4 B 1
08
AC8
SOFTWARE
LYS A:273 , GLY A:275 , GLY A:276 , ARG A:277 , VAL A:278 , THR A:280 , LYS A:282 , ARG A:284 , TYR A:295 , ARG A:305 , LYS A:343 , ASN A:354 , HIS A:355 , HOH A:409 , HOH A:415 , HOH A:418 , HOH A:430 , HOH A:432 , HOH A:442 , HOH A:450 , HOH A:513 , HOH A:556 , HOH A:651 , HOH A:744
BINDING SITE FOR RESIDUE 4IP A 405
09
AC9
SOFTWARE
ASN A:208 , PHE A:263 , HOH A:684
BINDING SITE FOR RESIDUE PGE A 406
10
BC1
SOFTWARE
ALA A:196 , MSE A:221 , ASN A:222 , ARG A:223 , THR A:289 , ASP A:290 , TYR A:385 , LEU A:388 , ALA A:389 , LYS A:392 , SER B:62 , GLN B:65
BINDING SITE FOR RESIDUE PE5 A 407
11
BC2
SOFTWARE
LYS B:107 , LYS B:273 , GLY B:275 , GLY B:276 , ARG B:277 , VAL B:278 , THR B:280 , LYS B:282 , ARG B:284 , TYR B:295 , ARG B:305 , LYS B:343 , ASN B:354 , HIS B:355 , HOH B:404 , HOH B:416 , HOH B:417 , HOH B:431 , HOH B:433 , HOH B:495 , HOH B:621 , HOH B:639 , HOH B:645
BINDING SITE FOR RESIDUE 4IP B 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: SEC7 (A:63-246,B:63-246)
2: PH_DOMAIN (A:264-380,B:264-380)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SEC7
PS50190
SEC7 domain profile.
CYH3_MOUSE
59-246
2
A:63-246
B:63-246
2
PH_DOMAIN
PS50003
PH domain profile.
CYH3_MOUSE
264-380
2
A:264-380
B:264-380
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2r09a1 (A:65-252)
1b: SCOP_d2r09b1 (B:65-252)
2a: SCOP_d2r09a2 (A:266-391)
2b: SCOP_d2r09b2 (B:266-391)
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Protein Domains
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(
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Sec7 domain
(22)
Family
:
Sec7 domain
(14)
Protein domain
:
Cytohesin-1/b2-1
(3)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d2r09a1
A:65-252
1b
d2r09b1
B:65-252
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Grp1
(6)
Mouse (Mus musculus) [TaxId: 10090]
(6)
2a
d2r09a2
A:266-391
2b
d2r09b2
B:266-391
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_PH_2r09B01 (B:265-380)
1b: PFAM_PH_2r09B02 (B:265-380)
2a: PFAM_Sec7_2r09B03 (B:63-248)
2b: PFAM_Sec7_2r09B04 (B:63-248)
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Clans
(
)
(
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(
)
Organisms
(
)
(
)
Clan
:
PH
(111)
Family
:
PH
(71)
Mus musculus (Mouse)
(20)
1a
PH-2r09B01
B:265-380
1b
PH-2r09B02
B:265-380
Clan
:
no clan defined [family: Sec7]
(12)
Family
:
Sec7
(12)
Mus musculus (Mouse)
(2)
2a
Sec7-2r09B03
B:63-248
2b
Sec7-2r09B04
B:63-248
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Asymmetric Unit 1
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