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2R07
Asym. Unit
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Asym.Unit (119 KB)
Biol.Unit 1, α-C (6.3 MB)
Biol.Unit 1 (6.3 MB)
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(1)
Title
:
STRUCTURAL ANALYSIS OF ANTIVIRAL AGENTS THAT INTERACT WITH THE CAPSID OF HUMAN RHINOVIRUSES
Authors
:
J. Badger, T. J. Smith, M. G. Rossmann
Date
:
03 Oct 88 (Deposition) - 15 Jan 90 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : 1,2,3,4
Biol. Unit 1: 1,2,3,4 (60x)
Keywords
:
Rhinovirus Coat Protein, Icosahedral Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Badger, I. Minor, M. A. Oliveira, T. J. Smith, M. G. Rossmann
Structural Analysis Of Antiviral Agents That Interact With The Capsid Of Human Rhinoviruses.
Proteins V. 6 1 1989
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 5-(5-(6-CHLORO-4-(4,5-DIHYDRO-2-OX... (W33a)
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No.
Name
Count
Type
Full Name
1
W33
1
Ligand/Ion
5-(5-(6-CHLORO-4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)PENTYL)-3-METHYL ISOXAZOLE
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE 1:104 , LEU 1:106 , TYR 1:128 , TYR 1:152 , PRO 1:174 , VAL 1:176 , PHE 1:186 , VAL 1:191 , ASN 1:219 , MET 1:221 , MET 1:224 , ALA 3:24
BINDING SITE FOR RESIDUE W33 1 900
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2r07_1 (4:,2:)
1b: SCOP_d2r071_ (1:)
1c: SCOP_d2r073_ (3:)
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Protein Domains
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Rhinovirus coat proteins
(46)
Human rhinovirus B 14 (HRV-14) [TaxId: 12131]
(30)
1a
d2r07.1
4:,2:
1b
d2r071_
1:
1c
d2r073_
3:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2r07400 (4:29-68)
2a: CATH_2r07300 (3:1-236)
2b: CATH_2r07200 (2:8-262)
2c: CATH_2r07100 (1:17-289)
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Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
Rhinovirus 14, subunit 4
(68)
Human rhinovirus 14. Organism_taxid: 12131.
(26)
1a
2r07400
4:29-68
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Human rhinovirus 14. Organism_taxid: 12131.
(29)
2a
2r07300
3:1-236
2b
2r07200
2:8-262
2c
2r07100
1:17-289
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rhv_2r07301 (3:28-197)
1b: PFAM_Rhv_2r07302 (3:28-197)
1c: PFAM_Rhv_2r07303 (3:28-197)
2a: PFAM_Pico_P1A_2r07401 (4:29-67)
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Clan
:
Viral_ssRNA_CP
(106)
Family
:
Rhv
(55)
Human rhinovirus 14 (HRV-14)
(20)
1a
Rhv-2r07301
3:28-197
1b
Rhv-2r07302
3:28-197
1c
Rhv-2r07303
3:28-197
Clan
:
no clan defined [family: Pico_P1A]
(41)
Family
:
Pico_P1A
(41)
Human rhinovirus 14 (HRV-14)
(20)
2a
Pico_P1A-2r07401
4:29-67
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Asym.Unit (119 KB)
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Biol.Unit 1 (6.3 MB)
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