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Getting 'Exon' information from database.
2QZ4
Asym. Unit
Info
Asym.Unit (42 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
HUMAN PARAPLEGIN, AAA DOMAIN IN COMPLEX WITH ADP
Authors
:
T. Karlberg, L. Lehtio, C. H. Arrowsmith, H. Berglund, R. D. Busam, R. Co L. G. Dahlgren, A. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hamma M. D. Herman, I. Johansson, A. Kallas, T. Kotenyova, M. Moche, M. E. Nil P. Nordlund, T. Nyman, J. Persson, C. Sagemark, M. Sundstrom, A. G. Tho L. Tresauges, S. Van Den Berg, J. Weigelt, M. Welin, L. Holmberg-Sch Structural Genomics Consortium (Sgc)
Date
:
16 Aug 07 (Deposition) - 11 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Aaa+, Spg7, Protease, Adp, Structural Genomics, Structural Genomics Consortium, Sgc, Atp-Binding, Nucleotide-Binding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Karlberg, S. Van Den Berg, M. Hammarstrom, J. Sagemark, I. Johansson, L. Holmberg-Schiavone, H. Schuler
Crystal Structure Of The Atpase Domain Of The Human Aaa+ Protein Paraplegin/Spg7.
Plos One V. 4 E6975 2009
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:27 , HOH A:28 , HOH A:54 , HOH A:55 , ASP A:310 , ALA A:312 , PRO A:351 , GLY A:352 , CYS A:353 , GLY A:354 , LYS A:355 , THR A:356 , LEU A:357 , ARG A:389 , SER A:392 , HIS A:492 , GLY A:518 , ALA A:519
BINDING SITE FOR RESIDUE ADP A 700
[
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_063607 (G349S, chain A, )
2: VAR_063608 (R486Q, chain A, )
3: VAR_017433 (T503A, chain A, )
4: VAR_063609 (A510V, chain A, )
5: VAR_063610 (F545L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063607
G
349
S
SPG7_HUMAN
Disease (SPG7)
141659620
A
G
349
S
2
UniProt
VAR_063608
R
486
Q
SPG7_HUMAN
Polymorphism
111475461
A
R
486
Q
3
UniProt
VAR_017433
T
503
A
SPG7_HUMAN
Polymorphism
2292954
A
T
503
A
4
UniProt
VAR_063609
A
510
V
SPG7_HUMAN
Disease (SPG7)
61755320
A
A
510
V
5
UniProt
VAR_063610
F
545
L
SPG7_HUMAN
Polymorphism
---
A
F
545
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(7, 7)
Info
All Exons
Exon 1.9 (A:304-329)
Exon 1.10 (A:330-384 (gaps))
Exon 1.11 (A:384-442 (gaps))
Exon 1.13 (A:442-483)
Exon 1.14 (A:484-518)
Exon 1.15a (A:518-555 (gaps))
Exon 1.21b (A:555-559)
View:
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All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/1.10
3: Boundary 1.10/1.11
4: Boundary 1.11/1.13
5: Boundary 1.13/1.14
6: Boundary 1.14/1.15a
7: Boundary 1.15a/1.21b
8: Boundary 1.21b/1.22b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000268704
1a
ENSE00000946159
chr16:
89574811-89575008
198
SPG7_HUMAN
1-61
61
0
-
-
1.2
ENST00000268704
2
ENSE00001401252
chr16:
89576898-89577000
103
SPG7_HUMAN
62-96
35
0
-
-
1.3
ENST00000268704
3
ENSE00001414953
chr16:
89579356-89579445
90
SPG7_HUMAN
96-126
31
0
-
-
1.6b
ENST00000268704
6b
ENSE00001408619
chr16:
89590414-89590655
242
SPG7_HUMAN
126-206
81
0
-
-
1.7b
ENST00000268704
7b
ENSE00001420681
chr16:
89592737-89592876
140
SPG7_HUMAN
207-253
47
0
-
-
1.8
ENST00000268704
8
ENSE00001409998
chr16:
89595885-89595987
103
SPG7_HUMAN
253-287
35
0
-
-
1.9
ENST00000268704
9
ENSE00001418083
chr16:
89597091-89597216
126
SPG7_HUMAN
288-329
42
1
A:304-329
26
1.10
ENST00000268704
10
ENSE00001427640
chr16:
89598312-89598474
163
SPG7_HUMAN
330-384
55
1
A:330-384 (gaps)
55
1.11
ENST00000268704
11
ENSE00001401248
chr16:
89598871-89599044
174
SPG7_HUMAN
384-442
59
1
A:384-442 (gaps)
59
1.13
ENST00000268704
13
ENSE00001410114
chr16:
89611056-89611180
125
SPG7_HUMAN
442-483
42
1
A:442-483
42
1.14
ENST00000268704
14
ENSE00001434018
chr16:
89613066-89613168
103
SPG7_HUMAN
484-518
35
1
A:484-518
35
1.15a
ENST00000268704
15a
ENSE00001427588
chr16:
89614411-89614521
111
SPG7_HUMAN
518-555
38
1
A:518-555 (gaps)
38
1.21b
ENST00000268704
21b
ENSE00001359493
chr16:
89616902-89617017
116
SPG7_HUMAN
555-593
39
1
A:555-559
5
1.22b
ENST00000268704
22b
ENSE00001402484
chr16:
89619387-89619543
157
SPG7_HUMAN
594-646
53
0
-
-
1.24b
ENST00000268704
24b
ENSE00001419909
chr16:
89620202-89620368
167
SPG7_HUMAN
646-701
56
0
-
-
1.25
ENST00000268704
25
ENSE00001429395
chr16:
89620894-89620971
78
SPG7_HUMAN
702-727
26
0
-
-
1.26
ENST00000268704
26
ENSE00001283443
chr16:
89623295-89624174
880
SPG7_HUMAN
728-795
68
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2qz4a_ (A:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d2qz4a_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2qz4A01 (A:304-479)
2a: CATH_2qz4A02 (A:480-556)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2qz4A01
A:304-479
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
[code=1.10.8.60, no name defined]
(73)
Human (Homo sapiens)
(1)
2a
2qz4A02
A:480-556
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_AAA_2qz4A01 (A:345-479)
2a: PFAM_Peptidase_M41_2qz4A02 (A:541-559)
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Clans
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(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
AAA
(26)
Homo sapiens (Human)
(2)
1a
AAA-2qz4A01
A:345-479
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M41
(5)
Homo sapiens (Human)
(1)
2a
Peptidase_M41-2qz4A02
A:541-559
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Asymmetric Unit 1
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