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2QZ3
Biol. Unit 1
Info
Asym.Unit (73 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A GLYCOSIDE HYDROLASE FAMILY 11 XYLANASE FROM BACILLUS SUBTILIS IN COMPLEX WITH XYLOTETRAOSE
Authors
:
E. Vandermarliere, T. M. Bourgois, S. V. Strelkov, J. A. Delcour, C. M. Courtin, A. Rabijns
Date
:
16 Aug 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycoside Hydrolase, Xylanase, Glycosidase, Xylan Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Vandermarliere, T. M. Bourgois, S. Rombouts, S. Van Campenhout, G. Volckaert, S. V. Strelkov, J. A. Delcour, A. Rabijns, C. M. Courtin
Crystallographic Analysis Shows Substrate Binding At The -3 To +1 Active-Site Subsites And At The Surface Of Glycoside Hydrolase Family 11 Endo-1, 4-Beta-Xylanases.
Biochem. J. V. 410 71 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: BETA-D-XYLOPYRANOSE (XYPa)
2b: BETA-D-XYLOPYRANOSE (XYPb)
2c: BETA-D-XYLOPYRANOSE (XYPc)
2d: BETA-D-XYLOPYRANOSE (XYPd)
2e: BETA-D-XYLOPYRANOSE (XYPe)
2f: BETA-D-XYLOPYRANOSE (XYPf)
2g: BETA-D-XYLOPYRANOSE (XYPg)
2h: BETA-D-XYLOPYRANOSE (XYPh)
2i: BETA-D-XYLOPYRANOSE (XYPi)
2j: BETA-D-XYLOPYRANOSE (XYPj)
2k: BETA-D-XYLOPYRANOSE (XYPk)
2l: BETA-D-XYLOPYRANOSE (XYPl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
XYP
6
Ligand/Ion
BETA-D-XYLOPYRANOSE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: BC3 (SOFTWARE)
8: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:9 , ILE A:118 , XYP A:187
BINDING SITE FOR RESIDUE XYP A 186
2
AC2
SOFTWARE
GLN A:7 , TRP A:9 , TYR A:69 , TRP A:71 , PRO A:116 , SER A:117 , TYR A:166 , XYP A:186 , XYP A:188
BINDING SITE FOR RESIDUE XYP A 187
3
AC3
SOFTWARE
TRP A:9 , ASN A:35 , VAL A:37 , TYR A:69 , GLU A:78 , TYR A:80 , ARG A:112 , PRO A:116 , GLN A:127 , XYP A:187 , HOH A:255 , HOH A:1159
BINDING SITE FOR RESIDUE XYP A 188
4
AC4
SOFTWARE
TRP A:185 , XYP A:190
BINDING SITE FOR RESIDUE XYP A 189
5
AC5
SOFTWARE
ASN A:54 , ASN A:141 , XYP A:189 , XYP A:191 , HOH A:281 , HOH A:1146
BINDING SITE FOR RESIDUE XYP A 190
6
AC6
SOFTWARE
ASN A:54 , GLY A:56 , THR A:111 , TYR A:113 , ASN A:181 , THR A:183 , XYP A:190
BINDING SITE FOR RESIDUE XYP A 191
7
BC3
SOFTWARE
ASP A:119 , GLY A:120 , GLY B:56 , VAL B:57 , XYP B:190 , HOH B:338
BINDING SITE FOR RESIDUE XYP B 191
8
BC4
SOFTWARE
ASN A:20 , GLY A:23 , LYS A:40 , HOH A:1045 , HOH A:1082 , ASP B:4 , ASN B:20
BINDING SITE FOR RESIDUE ACY A 1022
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GH11_1 (A:75-85)
2: GH11_2 (A:169-180)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH11_1
PS00776
Glycosyl hydrolases family 11 (GH11) active site signature 1.
XYNA_BACSU
103-113
1
A:75-85
-
2
GH11_2
PS00777
Glycosyl hydrolases family 11 (GH11) active site signature 2.
XYNA_BACSU
197-208
1
A:169-180
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2qz3a_ (A:)
1b: SCOP_d2qz3b_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Xylanase/endoglucanase 11/12
(93)
Protein domain
:
automated matches
(10)
Bacillus subtilis [TaxId: 1423]
(2)
1a
d2qz3a_
A:
1b
d2qz3b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2qz3A00 (A:2-185)
1b: CATH_2qz3B00 (B:2-185)
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)
Organisms
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.180, no name defined]
(77)
Bacillus subtilis. Organism_taxid: 1423.
(3)
1a
2qz3A00
A:2-185
1b
2qz3B00
B:2-185
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_11_2qz3B01 (B:2-184)
1b: PFAM_Glyco_hydro_11_2qz3B02 (B:2-184)
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Clan
:
Concanavalin
(293)
Family
:
Glyco_hydro_11
(14)
Bacillus subtilis
(3)
1a
Glyco_hydro_11-2qz3B01
B:2-184
1b
Glyco_hydro_11-2qz3B02
B:2-184
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (73 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (36 KB)
Header - Biol.Unit 2
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