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2QYP
Asym. Unit
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Asym.Unit (30 KB)
Biol.Unit 1 (26 KB)
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(1)
Title
:
ORTHORHOMBIC CRYSTAL STRUCTURE OF HUMAN SAPOSIN C DIMER IN OPEN CONFORMATION
Authors
:
M. Rossmann, W. Saenger, T. Maier
Date
:
15 Aug 07 (Deposition) - 29 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Saposin, Activator Protein, Sap, Alternative Splicing, Disease Mutation, Gaucher Disease, Glycoprotein, Gm2- Gangliosidosis, Lipid Metabolism, Lysosome, Metachromatic Leukodystrophy, Sphingolipid Metabolism, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Rossmann, R. Schultz-Heienbrok, J. Behlke, N. Remmel, C. Alings, K. Sandhoff, W. Saenger, T. Maier
Crystal Structures Of Human Saposins C And D: Implications For Lipid Recognition And Membrane Interactions.
Structure V. 16 809 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042441 (L39P, chain A/B, )
2: VAR_006945 (C78F, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042441
L
349
P
SAP_HUMAN
Disease (AGD)
---
A/B
L
39
P
2
UniProt
VAR_006945
C
388
F
SAP_HUMAN
Disease (AGD)
---
A/B
C
78
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SAP_B (-|-|A:1-78,B:1-78|-)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SAP_B
PS50015
Saposin B type domain profile.
SAP_HUMAN
59-142
194-275
311-392
405-486
2
-
-
A:1-78
B:1-78
-
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Exons
(3, 5)
Info
All Exons
Exon 1.10c (- | B:-2-0)
Exon 1.11 (A:1-25 | B:1-25)
Exon 1.12b (A:26-78 | B:26-78)
View:
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Label:
All Exon Boundaries
1: Boundary 1.7/1.10c
2: Boundary 1.10c/1.11
3: Boundary 1.11/1.12b
4: Boundary 1.12b/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000394936
1a
ENSE00001858117
chr10:
73611126-73610939
188
SAP_HUMAN
1-14
14
0
-
-
1.2
ENST00000394936
2
ENSE00001239781
chr10:
73594262-73594129
134
SAP_HUMAN
14-58
45
0
-
-
1.3
ENST00000394936
3
ENSE00000987087
chr10:
73591677-73591603
75
SAP_HUMAN
59-83
25
0
-
-
1.4b
ENST00000394936
4b
ENSE00000987088
chr10:
73591008-73590883
126
SAP_HUMAN
84-125
42
0
-
-
1.5
ENST00000394936
5
ENSE00001239733
chr10:
73588834-73588634
201
SAP_HUMAN
126-192
67
0
-
-
1.6
ENST00000394936
6
ENSE00000987090
chr10:
73587914-73587771
144
SAP_HUMAN
193-240
48
0
-
-
1.7
ENST00000394936
7
ENSE00000987091
chr10:
73585650-73585594
57
SAP_HUMAN
241-259
19
0
-
-
1.10c
ENST00000394936
10c
ENSE00001239711
chr10:
73581764-73581633
132
SAP_HUMAN
260-303
44
1
-
B:-2-0
-
3
1.11
ENST00000394936
11
ENSE00000987093
chr10:
73580092-73579997
96
SAP_HUMAN
304-335
32
2
A:1-25
B:1-25
25
25
1.12b
ENST00000394936
12b
ENSE00000987094
chr10:
73579657-73579471
187
SAP_HUMAN
336-398
63
2
A:26-78
B:26-78
53
53
1.13
ENST00000394936
13
ENSE00000987095
chr10:
73579379-73579222
158
SAP_HUMAN
398-450
53
0
-
-
1.14b
ENST00000394936
14b
ENSE00000987096
chr10:
73578868-73578788
81
SAP_HUMAN
451-477
27
0
-
-
1.15b
ENST00000394936
15b
ENSE00000987097
chr10:
73578481-73578374
108
SAP_HUMAN
478-513
36
0
-
-
1.16e
ENST00000394936
16e
ENSE00001917960
chr10:
73577233-73576055
1179
SAP_HUMAN
514-524
11
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2qypa_ (A:)
1b: SCOP_d2qypb_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Saposin-like
(21)
Superfamily
:
Saposin
(17)
Family
:
NKL-like
(13)
Protein domain
:
Saposin C
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d2qypa_
A:
1b
d2qypb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2qypA00 (A:1-78)
1b: CATH_2qypB00 (B:-2-78)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
NK-Lysin
(9)
Homologous Superfamily
:
NK-Lysin
(9)
Human (Homo sapiens)
(7)
1a
2qypA00
A:1-78
1b
2qypB00
B:-2-78
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_SapB_1_2qypB01 (B:2-40)
1b: PFAM_SapB_1_2qypB02 (B:2-40)
2a: PFAM_SapB_2_2qypB03 (B:44-78)
2b: PFAM_SapB_2_2qypB04 (B:44-78)
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Clans
(
)
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Families
(
)
(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: SapB_1]
(11)
Family
:
SapB_1
(11)
Homo sapiens (Human)
(7)
1a
SapB_1-2qypB01
B:2-40
1b
SapB_1-2qypB02
B:2-40
Clan
:
no clan defined [family: SapB_2]
(17)
Family
:
SapB_2
(17)
Homo sapiens (Human)
(11)
2a
SapB_2-2qypB03
B:44-78
2b
SapB_2-2qypB04
B:44-78
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