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2QYF
Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MAD2/P31(COMET)/MAD2-BINDING PEPTIDE TERNARY COMPLEX
Authors
:
D. R. Tomchick, X. Luo
Date
:
14 Aug 07 (Deposition) - 29 Jan 08 (Release) - 18 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,E (1x)
Biol. Unit 2: C,D,F (1x)
Keywords
:
Protein-Peptide Complex, Mad2 Family, Spindle Assembly Checkpoint, Cell Cycle, Cell Division, Mitosis, Nucleus, Phosphorylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yang, B. Li, D. R. Tomchick, M. Machius, J. Rizo, H. Yu, X. Luo
P31Comet Blocks Mad2 Activation Through Structural Mimicry.
Cell(Cambridge, Mass. ) V. 131 744 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HORMA (A:14-197,C:14-197)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HORMA
PS50815
HORMA domain profile.
MD2L1_HUMAN
14-197
2
A:14-197
C:14-197
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Exons
(7, 14)
Info
All Exons
Exon 1.1a (A:9-25 | C:12-25)
Exon 1.2a (A:25-74 | C:25-74)
Exon 1.3 (A:74-114 | C:74-107)
Exon 1.4b (A:114-149 | C:119-149)
Exon 1.5c (A:149-205 | C:149-205)
Exon 2.4a (B:54-96 (gaps) | D:54-96)
Exon 2.5c (B:124-272 (gaps) | D:119-273 (gaps...)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5c
6: Boundary 1.5c/-
7: Boundary 2.3a/2.4a
8: Boundary 2.4a/2.5c
9: Boundary 2.5c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000296509
1a
ENSE00001705676
chr4:
120988229-120987817
413
MD2L1_HUMAN
1-25
25
2
A:9-25
C:12-25
17
14
1.2a
ENST00000296509
2a
ENSE00001081494
chr4:
120986973-120986827
147
MD2L1_HUMAN
25-74
50
2
A:25-74
C:25-74
50
50
1.3
ENST00000296509
3
ENSE00001081493
chr4:
120983250-120983130
121
MD2L1_HUMAN
74-114
41
2
A:74-114
C:74-107
41
34
1.4b
ENST00000296509
4b
ENSE00001765948
chr4:
120982132-120982029
104
MD2L1_HUMAN
114-149
36
2
A:114-149
C:119-149
36
31
1.5c
ENST00000296509
5c
ENSE00001796865
chr4:
120981445-120980577
869
MD2L1_HUMAN
149-205
57
2
A:149-205
C:149-205
57
57
2.3a
ENST00000372171
3a
ENSE00002154003
chr6:
43603556-43603658
103
MD2BP_HUMAN
1-16
16
0
-
-
2.4a
ENST00000372171
4a
ENSE00001141072
chr6:
43604118-43604383
266
MD2BP_HUMAN
16-104
89
2
B:54-96 (gaps)
D:54-96
43
43
2.5c
ENST00000372171
5c
ENSE00002085727
chr6:
43607758-43608689
932
MD2BP_HUMAN
105-274
170
2
B:124-272 (gaps)
D:119-273 (gaps)
149
155
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2qyfa_ (A:)
1b: SCOP_d2qyfc_ (C:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
The spindle assembly checkpoint protein mad2
(8)
Superfamily
:
The spindle assembly checkpoint protein mad2
(8)
Family
:
The spindle assembly checkpoint protein mad2
(7)
Protein domain
:
The spindle assembly checkpoint protein mad2
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2qyfa_
A:
1b
d2qyfc_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_HORMA_2qyfC01 (C:12-191)
1b: PFAM_HORMA_2qyfC02 (C:12-191)
2a: PFAM_p31comet_2qyfD01 (D:54-273)
2b: PFAM_p31comet_2qyfD02 (D:54-273)
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Clan
:
no clan defined [family: HORMA]
(5)
Family
:
HORMA
(5)
Homo sapiens (Human)
(5)
1a
HORMA-2qyfC01
C:12-191
1b
HORMA-2qyfC02
C:12-191
Clan
:
no clan defined [family: p31comet]
(1)
Family
:
p31comet
(1)
Homo sapiens (Human)
(1)
2a
p31comet-2qyfD01
D:54-273
2b
p31comet-2qyfD02
D:54-273
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Asym.Unit (148 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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