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Biol. Unit 1
Info
Asym.Unit (130 KB)
Biol.Unit 1 (244 KB)
Biol.Unit 2 (124 KB)
Biol.Unit 3 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE SUGAR PHOSPHATE ISOMERASE/EPIMERASE (AVA4194) FROM ANABAENA VARIABILIS ATCC 29413 AT 1.78 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
09 Aug 07 (Deposition) - 04 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.78
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A (2x)
Biol. Unit 3: B (2x)
Keywords
:
Putative Sugar Phosphate Isomerase/Epimerase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Sugar Phosphate Isomerase/Epimerase (Yp_324688. 1) From Anabaena Variabilis Atcc 29413 At 1. 78 A Resolution
To Be Published
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: GLYCEROL (GOLa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
4a: D-XYLOSE (LINEAR FORM) (XLSa)
4b: D-XYLOSE (LINEAR FORM) (XLSb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
4
XLS
4
Ligand/Ion
D-XYLOSE (LINEAR FORM)
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:86 , PRO A:128 , GLU A:182 , GLU A:188 , HIS A:218 , ARG A:252 , PHE A:282 , HOH A:406 , HOH A:530
BINDING SITE FOR RESIDUE XLS A 401
02
AC2
SOFTWARE
ASN B:86 , PRO B:128 , GLU B:182 , GLU B:188 , HIS B:218 , ARG B:252 , PHE B:282 , HOH B:404 , HOH B:537
BINDING SITE FOR RESIDUE XLS B 401
03
AC3
SOFTWARE
GLU A:182 , ASP A:215 , GLN A:246 , ARG A:252 , GLU A:280 , HOH A:406
BINDING SITE FOR RESIDUE ZN A 400
04
AC4
SOFTWARE
GLU B:182 , ASP B:215 , GLN B:246 , GLU B:280 , HOH B:404
BINDING SITE FOR RESIDUE ZN B 400
05
AC5
SOFTWARE
ALA A:287 , HOH A:510
BINDING SITE FOR RESIDUE CL A 402
06
AC6
SOFTWARE
PRO B:286 , ALA B:287 , HOH B:445
BINDING SITE FOR RESIDUE CL B 402
07
AC7
SOFTWARE
PRO A:100 , GLU A:101 , PRO B:100 , GLU B:101
BINDING SITE FOR RESIDUE CL A 403
08
AC8
SOFTWARE
ARG B:103 , GLN B:104 , HOH B:750
BINDING SITE FOR RESIDUE CL B 403
09
AC9
SOFTWARE
ARG A:103 , GLN A:104
BINDING SITE FOR RESIDUE CL A 404
10
BC1
SOFTWARE
ASP A:315 , GLU B:101 , GLN B:104 , GLU B:108 , HOH B:661
BINDING SITE FOR RESIDUE GOL A 405
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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All SCOP Domains
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2qw5A00 (A:6-332)
1b: CATH_2qw5B00 (B:8-332)
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Classes
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Homologous Superfamilies
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Divalent-metal-dependent TIM barrel enzymes
(98)
Anabaena variabilis atcc 29413. Organism_taxid: 240292. Strain: pcc 7937.
(1)
1a
2qw5A00
A:6-332
1b
2qw5B00
B:8-332
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_AP_endonuc_2_2qw5B01 (B:36-257)
1b: PFAM_AP_endonuc_2_2qw5B02 (B:36-257)
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Clans
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Organisms
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(
)
Clan
:
TIM_barrel
(694)
Family
:
AP_endonuc_2
(72)
Anabaena variabilis (strain ATCC 29413 / PCC 7937)
(1)
1a
AP_endonuc_2-2qw5B01
B:36-257
1b
AP_endonuc_2-2qw5B02
B:36-257
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Asym.Unit (130 KB)
Header - Asym.Unit
Biol.Unit 1 (244 KB)
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