PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2QVV
Biol. Unit 1
Info
Asym.Unit (113 KB)
Biol.Unit 1 (214 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
PORCINE LIVER FRUCTOSE-1,6-BISPHOSPHATASE COCRYSTALLIZED WITH FRU-2,6-P2 AND ZN2+, I(T)-STATE
Authors
:
J. K. Hines, X. Chen, J. C. Nix, H. J. Fromm, R. B. Honzatko
Date
:
08 Aug 07 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Homotetramer; Sugar Phosphatase Fold, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. K. Hines, X. Chen, J. C. Nix, H. J. Fromm, R. B. Honzatko
Structures Of Mammalian And Bacterial Fructose-1, 6-Bisphosphatase Reveal The Basis For Synergism In Amp/Fructose 2, 6-Bisphosphate Inhibition
J. Biol. Chem. V. 282 36121 2007
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: FRUCTOSE-2,6-DIPHOSPHATE (FDPa)
1b: FRUCTOSE-2,6-DIPHOSPHATE (FDPb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FDP
4
Ligand/Ion
FRUCTOSE-2,6-DIPHOSPHATE
2
PO4
4
Ligand/Ion
PHOSPHATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:121 , GLY A:122 , SER A:123 , SER A:124 , ASN A:212 , TYR A:215 , TYR A:244 , GLY A:246 , MET A:248 , TYR A:264 , LYS A:274 , ARG A:276 , GLU A:280 , ZN A:403 , HOH A:421 , HOH A:447 , HOH A:485 , HOH A:575 , HOH A:613 , HOH A:641 , ARG B:243
BINDING SITE FOR RESIDUE FDP A 402
2
AC2
SOFTWARE
ARG A:243 , ASP B:121 , GLY B:122 , SER B:123 , SER B:124 , ASN B:212 , TYR B:215 , TYR B:244 , GLY B:246 , MET B:248 , TYR B:264 , LYS B:274 , ARG B:276 , GLU B:280 , ZN B:339 , HOH B:409 , HOH B:411 , HOH B:452 , HOH B:482 , HOH B:510 , HOH B:584 , HOH B:648 , HOH B:673
BINDING SITE FOR RESIDUE FDP B 338
3
AC3
SOFTWARE
ASP A:118 , ASP A:121 , GLU A:280 , FDP A:402 , HOH A:613
BINDING SITE FOR RESIDUE ZN A 403
4
AC4
SOFTWARE
ASP B:118 , ASP B:121 , GLU B:280 , FDP B:338 , HOH B:673
BINDING SITE FOR RESIDUE ZN B 339
5
AC5
SOFTWARE
GLY A:26 , THR A:27 , GLY A:28 , GLU A:29 , MET A:30 , LYS A:112 , TYR A:113
BINDING SITE FOR RESIDUE PO4 A 400
6
AC6
SOFTWARE
GLY B:26 , THR B:27 , GLY B:28 , GLU B:29 , MET B:30 , LYS B:112 , TYR B:113 , HOH B:541
BINDING SITE FOR RESIDUE PO4 B 401
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FBPASE (A:273-285,B:273-285)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FBPASE
PS00124
Fructose-1-6-bisphosphatase active site.
F16P1_PIG
274-286
4
A:273-285
B:273-285
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2qvva_ (A:)
1b: SCOP_d2qvvb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Carbohydrate phosphatase
(140)
Superfamily
:
Carbohydrate phosphatase
(140)
Family
:
Inositol monophosphatase/fructose-1,6-bisphosphatase-like
(121)
Protein domain
:
Fructose-1,6-bisphosphatase
(75)
Pig (Sus scrofa) [TaxId: 9823]
(65)
1a
d2qvva_
A:
1b
d2qvvb_
B:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2qvvA01 (A:9-199)
1b: CATH_2qvvB01 (B:9-199)
2a: CATH_2qvvA02 (A:200-334)
2b: CATH_2qvvB02 (B:200-334)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Fructose-1,6-Bisphosphatase; Chain A, domain 1
(114)
Homologous Superfamily
:
Fructose-1,6-Bisphosphatase, subunit A, domain 1
(114)
Pig (Sus scrofa)
(54)
1a
2qvvA01
A:9-199
1b
2qvvB01
B:9-199
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
[code=3.40.190.80, no name defined]
(109)
Pig (Sus scrofa)
(54)
2a
2qvvA02
A:200-334
2b
2qvvB02
B:200-334
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_FBPase_2qvvB01 (B:11-334)
1b: PFAM_FBPase_2qvvB02 (B:11-334)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Phospoesterase
(42)
Family
:
FBPase
(32)
Sus scrofa (Pig)
(19)
1a
FBPase-2qvvB01
B:11-334
1b
FBPase-2qvvB02
B:11-334
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (113 KB)
Header - Asym.Unit
Biol.Unit 1 (214 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2QVV
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help