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2QUN
Asym. Unit
Info
Asym.Unit (205 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF D-TAGATOSE 3-EPIMERASE FROM PSEUDOMONAS CICHORII IN COMPLEX WITH D-FRUCTOSE
Authors
:
H. Yoshida, M. Yamada, T. Nishitani, G. Takada, K. Izumori, S. Kamitori
Date
:
06 Aug 07 (Deposition) - 25 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.06
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Beta/Alpha Barrel, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
H. Yoshida, M. Yamada, T. Nishitani, G. Takada, K. Izumori, S. Kamitori
Crystal Structures Of D-Tagatose 3-Epimerase From Pseudomonas Cichorii And Its Complexes With D-Tagatose And D-Fructose
J. Mol. Biol. V. 374 443 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: D-FRUCTOSE (FUDa)
1b: D-FRUCTOSE (FUDb)
1c: D-FRUCTOSE (FUDc)
1d: D-FRUCTOSE (FUDd)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
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No.
Name
Count
Type
Full Name
1
FUD
4
Ligand/Ion
D-FRUCTOSE
2
MN
4
Ligand/Ion
MANGANESE (II) ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:66 , ILE A:67 , GLY A:68 , TRP A:113 , GLU A:152 , GLU A:158 , ASP A:185 , HIS A:188 , HIS A:211 , ARG A:217 , GLU A:246 , MN A:292 , HOH A:352
BINDING SITE FOR RESIDUE FUD A 291
2
AC2
SOFTWARE
CYS B:66 , ILE B:67 , TRP B:113 , GLU B:152 , GLU B:158 , ASP B:185 , HIS B:188 , HIS B:211 , ARG B:217 , GLU B:246 , MN B:292 , HOH B:509
BINDING SITE FOR RESIDUE FUD B 291
3
AC3
SOFTWARE
CYS C:66 , TRP C:113 , GLU C:152 , GLU C:158 , ASP C:185 , HIS C:188 , HIS C:211 , ARG C:217 , GLU C:246 , MN C:292 , HOH C:297 , HOH C:389
BINDING SITE FOR RESIDUE FUD C 291
4
AC4
SOFTWARE
CYS D:66 , LEU D:108 , TRP D:113 , GLU D:152 , GLU D:158 , ASP D:185 , HIS D:188 , HIS D:211 , ARG D:217 , GLU D:246 , MN D:292 , HOH D:499
BINDING SITE FOR RESIDUE FUD D 291
5
AC5
SOFTWARE
GLU A:152 , ASP A:185 , HIS A:211 , GLU A:246 , FUD A:291
BINDING SITE FOR RESIDUE MN A 292
6
AC6
SOFTWARE
GLU B:152 , ASP B:185 , HIS B:211 , GLU B:246 , FUD B:291
BINDING SITE FOR RESIDUE MN B 292
7
AC7
SOFTWARE
GLU C:152 , ASP C:185 , HIS C:211 , GLU C:246 , FUD C:291
BINDING SITE FOR RESIDUE MN C 292
8
AC8
SOFTWARE
GLU D:152 , ASP D:185 , HIS D:211 , GLU D:246 , FUD D:291
BINDING SITE FOR RESIDUE MN D 292
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_AP_endonuc_2_2qunD01 (D:23-225)
1b: PFAM_AP_endonuc_2_2qunD02 (D:23-225)
1c: PFAM_AP_endonuc_2_2qunD03 (D:23-225)
1d: PFAM_AP_endonuc_2_2qunD04 (D:23-225)
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)
(
)
Clan
:
TIM_barrel
(694)
Family
:
AP_endonuc_2
(72)
Pseudomonas cichorii
(3)
1a
AP_endonuc_2-2qunD01
D:23-225
1b
AP_endonuc_2-2qunD02
D:23-225
1c
AP_endonuc_2-2qunD03
D:23-225
1d
AP_endonuc_2-2qunD04
D:23-225
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Asym.Unit (205 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (103 KB)
Header - Biol.Unit 2
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