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2QUB
Asym. Unit
Info
Asym.Unit (597 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (106 KB)
Biol.Unit 4 (107 KB)
Biol.Unit 5 (105 KB)
Biol.Unit 6 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EXTRACELLULAR LIPASE LIPA FROM SERRATIA MARCESCENS
Authors
:
R. Meier, U. Baumann
Date
:
04 Aug 07 (Deposition) - 28 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,C,E,G,I,K
Biol. Unit 1: A (1x)
Biol. Unit 2: C (1x)
Biol. Unit 3: E (1x)
Biol. Unit 4: G (1x)
Biol. Unit 5: I (1x)
Biol. Unit 6: K (1x)
Keywords
:
Beta Roll, Alpha/Beta Hydrolase, Helical Hairpin, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Meier, T. Drepper, V. Svensson, K. E. Jaeger, U. Baumann
A Calcium-Gated Lid And A Large Beta-Roll Sandwich Are Revealed By The Crystal Structure Of Extracellular Lipase From Serratia Marcescens.
J. Biol. Chem. V. 282 31477 2007
[
close entry info
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Hetero Components
(1, 48)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1aa: CALCIUM ION (CAaa)
1ab: CALCIUM ION (CAab)
1ac: CALCIUM ION (CAac)
1ad: CALCIUM ION (CAad)
1ae: CALCIUM ION (CAae)
1af: CALCIUM ION (CAaf)
1ag: CALCIUM ION (CAag)
1ah: CALCIUM ION (CAah)
1ai: CALCIUM ION (CAai)
1aj: CALCIUM ION (CAaj)
1ak: CALCIUM ION (CAak)
1al: CALCIUM ION (CAal)
1am: CALCIUM ION (CAam)
1an: CALCIUM ION (CAan)
1ao: CALCIUM ION (CAao)
1ap: CALCIUM ION (CAap)
1aq: CALCIUM ION (CAaq)
1ar: CALCIUM ION (CAar)
1as: CALCIUM ION (CAas)
1at: CALCIUM ION (CAat)
1au: CALCIUM ION (CAau)
1av: CALCIUM ION (CAav)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
1x: CALCIUM ION (CAx)
1y: CALCIUM ION (CAy)
1z: CALCIUM ION (CAz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
48
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(48, 48)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:491 , GLY A:493 , ASP A:495 , GLY A:508 , ALA A:510 , ASP A:513
BINDING SITE FOR RESIDUE CA A 614
02
AC2
SOFTWARE
GLY A:528 , GLY A:530 , ASP A:532 , PHE A:549 , ASP A:552 , HOH A:705
BINDING SITE FOR RESIDUE CA A 615
03
AC3
SOFTWARE
ASN A:509 , GLY A:511 , ASP A:513 , GLY A:527 , SER A:529 , ASP A:532
BINDING SITE FOR RESIDUE CA A 616
04
AC4
SOFTWARE
GLY A:384 , GLY A:386 , ASP A:388 , ASP A:401 , GLY A:403 , ASN A:406
BINDING SITE FOR RESIDUE CA A 617
05
AC5
SOFTWARE
ARG A:393 , GLY A:395 , ASP A:397 , GLY A:410 , LYS A:412 , ASN A:415
BINDING SITE FOR RESIDUE CA A 618
06
AC6
SOFTWARE
SER A:375 , GLY A:377 , ASP A:379 , GLY A:392 , ASP A:394 , ASP A:397
BINDING SITE FOR RESIDUE CA A 619
07
AC7
SOFTWARE
GLU A:254 , ASP A:276 , ASN A:284 , ASN A:285 , HOH A:625 , HOH A:638
BINDING SITE FOR RESIDUE CA A 620
08
AC8
SOFTWARE
THR A:118 , GLN A:120 , SER A:144 , ASP A:153 , ASP A:157 , HOH A:678
BINDING SITE FOR RESIDUE CA A 621
09
AC9
SOFTWARE
GLY C:491 , GLY C:493 , ASP C:495 , GLY C:508 , ALA C:510 , ASP C:513
BINDING SITE FOR RESIDUE CA C 614
10
BC1
SOFTWARE
GLY C:528 , GLY C:530 , ASP C:532 , PHE C:549 , ASP C:552 , HOH C:751
BINDING SITE FOR RESIDUE CA C 615
11
BC2
SOFTWARE
ASN C:509 , GLY C:511 , ASP C:513 , GLY C:527 , SER C:529 , ASP C:532
BINDING SITE FOR RESIDUE CA C 616
12
BC3
SOFTWARE
GLY C:384 , GLY C:386 , ASP C:388 , ASP C:401 , GLY C:403 , ASN C:406
BINDING SITE FOR RESIDUE CA C 617
13
BC4
SOFTWARE
ARG C:393 , GLY C:395 , ASP C:397 , GLY C:410 , LYS C:412 , ASN C:415
BINDING SITE FOR RESIDUE CA C 618
14
BC5
SOFTWARE
SER C:375 , GLY C:377 , ASP C:379 , GLY C:392 , ASP C:394 , ASP C:397
BINDING SITE FOR RESIDUE CA C 619
15
BC6
SOFTWARE
GLU C:254 , ASP C:276 , ASN C:284 , ASN C:285 , HOH C:643 , HOH C:654
BINDING SITE FOR RESIDUE CA C 620
16
BC7
SOFTWARE
THR C:118 , GLN C:120 , SER C:144 , ASP C:153 , ASP C:157 , HOH C:633
BINDING SITE FOR RESIDUE CA C 621
17
BC8
SOFTWARE
GLY E:491 , GLY E:493 , ASP E:495 , GLY E:508 , ALA E:510 , ASP E:513
BINDING SITE FOR RESIDUE CA E 614
18
BC9
SOFTWARE
GLY E:528 , GLY E:530 , ASP E:532 , PHE E:549 , ASP E:552 , HOH E:756
BINDING SITE FOR RESIDUE CA E 615
19
CC1
SOFTWARE
ASN E:509 , GLY E:511 , ASP E:513 , GLY E:527 , SER E:529 , ASP E:532
BINDING SITE FOR RESIDUE CA E 616
20
CC2
SOFTWARE
GLY E:384 , GLY E:386 , ASP E:388 , ASP E:401 , GLY E:403 , ASN E:406
BINDING SITE FOR RESIDUE CA E 617
21
CC3
SOFTWARE
ARG E:393 , GLY E:395 , ASP E:397 , GLY E:410 , LYS E:412 , ASN E:415
BINDING SITE FOR RESIDUE CA E 618
22
CC4
SOFTWARE
SER E:375 , GLY E:377 , ASP E:379 , GLY E:392 , ASP E:394 , ASP E:397
BINDING SITE FOR RESIDUE CA E 619
23
CC5
SOFTWARE
GLU E:254 , ASP E:276 , ASN E:284 , ASN E:285 , HOH E:624 , HOH E:625
BINDING SITE FOR RESIDUE CA E 620
24
CC6
SOFTWARE
THR E:118 , GLN E:120 , SER E:144 , ASP E:153 , ASP E:157 , HOH E:653
BINDING SITE FOR RESIDUE CA E 621
25
CC7
SOFTWARE
GLY G:491 , GLY G:493 , ASP G:495 , GLY G:508 , ALA G:510 , ASP G:513
BINDING SITE FOR RESIDUE CA G 614
26
CC8
SOFTWARE
GLY G:528 , GLY G:530 , ASP G:532 , PHE G:549 , ASP G:552 , HOH G:642
BINDING SITE FOR RESIDUE CA G 615
27
CC9
SOFTWARE
ASN G:509 , GLY G:511 , ASP G:513 , GLY G:527 , SER G:529 , ASP G:532
BINDING SITE FOR RESIDUE CA G 616
28
DC1
SOFTWARE
GLY G:384 , GLY G:386 , ASP G:388 , ASP G:401 , GLY G:403 , ASN G:406
BINDING SITE FOR RESIDUE CA G 617
29
DC2
SOFTWARE
ARG G:393 , GLY G:395 , ASP G:397 , GLY G:410 , LYS G:412 , ASN G:415
BINDING SITE FOR RESIDUE CA G 618
30
DC3
SOFTWARE
SER G:375 , GLY G:377 , ASP G:379 , GLY G:392 , ASP G:394 , ASP G:397
BINDING SITE FOR RESIDUE CA G 619
31
DC4
SOFTWARE
GLU G:254 , ASP G:276 , ASN G:284 , ASN G:285 , HOH G:624 , HOH G:650
BINDING SITE FOR RESIDUE CA G 620
32
DC5
SOFTWARE
THR G:118 , GLN G:120 , SER G:144 , ASP G:153 , ASP G:157 , HOH G:630
BINDING SITE FOR RESIDUE CA G 621
33
DC6
SOFTWARE
GLY I:491 , GLY I:493 , ASP I:495 , GLY I:508 , ALA I:510 , ASP I:513
BINDING SITE FOR RESIDUE CA I 614
34
DC7
SOFTWARE
GLY I:528 , GLY I:530 , ASP I:532 , PHE I:549 , ASP I:552 , HOH I:847
BINDING SITE FOR RESIDUE CA I 615
35
DC8
SOFTWARE
ASN I:509 , GLY I:511 , ASP I:513 , GLY I:527 , SER I:529 , ASP I:532
BINDING SITE FOR RESIDUE CA I 616
36
DC9
SOFTWARE
GLY I:384 , GLY I:386 , ASP I:388 , ASP I:401 , GLY I:403 , ASN I:406
BINDING SITE FOR RESIDUE CA I 617
37
EC1
SOFTWARE
ARG I:393 , GLY I:395 , ASP I:397 , GLY I:410 , LYS I:412 , ASN I:415
BINDING SITE FOR RESIDUE CA I 618
38
EC2
SOFTWARE
SER I:375 , GLY I:377 , ASP I:379 , GLY I:392 , ASP I:394 , ASP I:397
BINDING SITE FOR RESIDUE CA I 619
39
EC3
SOFTWARE
GLU I:254 , ASP I:276 , ASN I:284 , ASN I:285 , HOH I:622 , HOH I:624
BINDING SITE FOR RESIDUE CA I 620
40
EC4
SOFTWARE
THR I:118 , GLN I:120 , SER I:144 , ASP I:153 , ASP I:157 , HOH I:631
BINDING SITE FOR RESIDUE CA I 621
41
EC5
SOFTWARE
GLY K:491 , GLY K:493 , ASP K:495 , GLY K:508 , ALA K:510 , ASP K:513
BINDING SITE FOR RESIDUE CA K 614
42
EC6
SOFTWARE
GLY K:528 , SER K:529 , GLY K:530 , ASP K:532 , PHE K:549 , ASP K:552 , HOH K:781
BINDING SITE FOR RESIDUE CA K 615
43
EC7
SOFTWARE
ASN K:509 , ALA K:510 , GLY K:511 , ASP K:513 , GLY K:527 , SER K:529 , ASP K:532
BINDING SITE FOR RESIDUE CA K 616
44
EC8
SOFTWARE
GLY K:384 , GLY K:386 , ASP K:388 , ASP K:401 , GLY K:403 , ASN K:406
BINDING SITE FOR RESIDUE CA K 617
45
EC9
SOFTWARE
ARG K:393 , GLY K:395 , ASP K:397 , GLY K:410 , LYS K:412 , ASN K:415
BINDING SITE FOR RESIDUE CA K 618
46
FC1
SOFTWARE
SER K:375 , GLY K:377 , ASP K:379 , GLY K:392 , ASP K:394 , ASP K:397
BINDING SITE FOR RESIDUE CA K 619
47
FC2
SOFTWARE
GLU K:254 , ASP K:276 , ASN K:284 , ASN K:285 , HOH K:637 , HOH K:662
BINDING SITE FOR RESIDUE CA K 620
48
FC3
SOFTWARE
THR K:118 , GLN K:120 , SER K:144 , ASP K:153 , ASP K:157 , HOH K:641
BINDING SITE FOR RESIDUE CA K 621
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(2, 36)
Info
all PFAM domains
1a: PFAM_Lipase_3_2qubK01 (K:137-263)
1b: PFAM_Lipase_3_2qubK02 (K:137-263)
1c: PFAM_Lipase_3_2qubK03 (K:137-263)
1d: PFAM_Lipase_3_2qubK04 (K:137-263)
1e: PFAM_Lipase_3_2qubK05 (K:137-263)
1f: PFAM_Lipase_3_2qubK06 (K:137-263)
2a: PFAM_HemolysinCabind_2qubK07 (K:546-563)
2b: PFAM_HemolysinCabind_2qubK08 (K:546-563)
2c: PFAM_HemolysinCabind_2qubK09 (K:546-563)
2d: PFAM_HemolysinCabind_2qubK10 (K:546-563)
2e: PFAM_HemolysinCabind_2qubK11 (K:546-563)
2f: PFAM_HemolysinCabind_2qubK12 (K:546-563)
2g: PFAM_HemolysinCabind_2qubK13 (K:546-563)
2h: PFAM_HemolysinCabind_2qubK14 (K:546-563)
2i: PFAM_HemolysinCabind_2qubK15 (K:546-563)
2j: PFAM_HemolysinCabind_2qubK16 (K:546-563)
2k: PFAM_HemolysinCabind_2qubK17 (K:546-563)
2l: PFAM_HemolysinCabind_2qubK18 (K:546-563)
2m: PFAM_HemolysinCabind_2qubK19 (K:546-563)
2n: PFAM_HemolysinCabind_2qubK20 (K:546-563)
2o: PFAM_HemolysinCabind_2qubK21 (K:546-563)
2p: PFAM_HemolysinCabind_2qubK22 (K:546-563)
2q: PFAM_HemolysinCabind_2qubK23 (K:546-563)
2r: PFAM_HemolysinCabind_2qubK24 (K:546-563)
2s: PFAM_HemolysinCabind_2qubK25 (K:546-563)
2t: PFAM_HemolysinCabind_2qubK26 (K:546-563)
2u: PFAM_HemolysinCabind_2qubK27 (K:546-563)
2v: PFAM_HemolysinCabind_2qubK28 (K:546-563)
2w: PFAM_HemolysinCabind_2qubK29 (K:546-563)
2x: PFAM_HemolysinCabind_2qubK30 (K:546-563)
2y: PFAM_HemolysinCabind_2qubK31 (K:546-563)
2z: PFAM_HemolysinCabind_2qubK32 (K:546-563)
2aa: PFAM_HemolysinCabind_2qubK33 (K:546-563)
2ab: PFAM_HemolysinCabind_2qubK34 (K:546-563)
2ac: PFAM_HemolysinCabind_2qubK35 (K:546-563)
2ad: PFAM_HemolysinCabind_2qubK36 (K:546-563)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Lipase_3
(11)
Serratia marcescens
(2)
1a
Lipase_3-2qubK01
K:137-263
1b
Lipase_3-2qubK02
K:137-263
1c
Lipase_3-2qubK03
K:137-263
1d
Lipase_3-2qubK04
K:137-263
1e
Lipase_3-2qubK05
K:137-263
1f
Lipase_3-2qubK06
K:137-263
Clan
:
no clan defined [family: HemolysinCabind]
(16)
Family
:
HemolysinCabind
(16)
Serratia marcescens
(4)
2a
HemolysinCabind-2qubK07
K:546-563
2b
HemolysinCabind-2qubK08
K:546-563
2c
HemolysinCabind-2qubK09
K:546-563
2d
HemolysinCabind-2qubK10
K:546-563
2e
HemolysinCabind-2qubK11
K:546-563
2f
HemolysinCabind-2qubK12
K:546-563
2g
HemolysinCabind-2qubK13
K:546-563
2h
HemolysinCabind-2qubK14
K:546-563
2i
HemolysinCabind-2qubK15
K:546-563
2j
HemolysinCabind-2qubK16
K:546-563
2k
HemolysinCabind-2qubK17
K:546-563
2l
HemolysinCabind-2qubK18
K:546-563
2m
HemolysinCabind-2qubK19
K:546-563
2n
HemolysinCabind-2qubK20
K:546-563
2o
HemolysinCabind-2qubK21
K:546-563
2p
HemolysinCabind-2qubK22
K:546-563
2q
HemolysinCabind-2qubK23
K:546-563
2r
HemolysinCabind-2qubK24
K:546-563
2s
HemolysinCabind-2qubK25
K:546-563
2t
HemolysinCabind-2qubK26
K:546-563
2u
HemolysinCabind-2qubK27
K:546-563
2v
HemolysinCabind-2qubK28
K:546-563
2w
HemolysinCabind-2qubK29
K:546-563
2x
HemolysinCabind-2qubK30
K:546-563
2y
HemolysinCabind-2qubK31
K:546-563
2z
HemolysinCabind-2qubK32
K:546-563
2aa
HemolysinCabind-2qubK33
K:546-563
2ab
HemolysinCabind-2qubK34
K:546-563
2ac
HemolysinCabind-2qubK35
K:546-563
2ad
HemolysinCabind-2qubK36
K:546-563
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select residue range 5 to 10 in all chains
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Asym.Unit (597 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Biol.Unit 3 (106 KB)
Header - Biol.Unit 3
Biol.Unit 4 (107 KB)
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Biol.Unit 5 (105 KB)
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