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Asym. Unit
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Asym.Unit (88 KB)
Biol.Unit 1 (81 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE NADP+-BOUND FAD-CONTAINING FNR-LIKE MODULE OF HUMAN METHIONINE SYNTHASE REDUCTASE
Authors
:
K. R. Wolthers, X. Lou, H. S. Toogood, D. Leys, N. S. Scrutton
Date
:
02 Aug 07 (Deposition) - 13 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha-Beta-Alpha Structural Motif, Flattened Antiparallel Beta Barrel, Flexible Hinge Region, Connecting Domain, Fad-Binding Region, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. R. Wolthers, X. Lou, H. S. Toogood, D. Leys, N. S. Scrutton
Mechanism Of Coenzyme Binding To Human Methionine Synthase Reductase Revealed Through The Crystal Structure Of The Fnr-Like Module And Isothermal Titration Calorimetry
Biochemistry V. 46 11833 2007
[
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: S-HYDROXYCYSTEINE (CSOa)
1b: S-HYDROXYCYSTEINE (CSOb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CSO A:421 , ARG A:451 , PRO A:452 , TYR A:453 , SER A:454 , VAL A:469 , PHE A:470 , ASN A:471 , VAL A:473 , PHE A:475 , GLY A:487 , VAL A:488 , CYS A:489 , THR A:490 , ARG A:525 , TRP A:697 , HOH A:705 , HOH A:708 , HOH A:758 , HOH A:766 , HOH A:767 , HOH A:826 , HOH A:840 , HOH A:858 , HOH A:861 , HOH A:960 , HOH A:1045 , HOH A:1051
BINDING SITE FOR RESIDUE FAD A 700
2
AC2
SOFTWARE
LYS A:291 , PRO A:545 , CYS A:580 , ARG A:581 , SER A:610 , ARG A:611 , TYR A:624 , GLN A:626 , ASP A:652 , ALA A:653 , MET A:656 , ASP A:659 , HOH A:710 , HOH A:718 , HOH A:947 , HOH A:1005
BINDING SITE FOR RESIDUE NAP A 701
[
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SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_034596 (S257T, chain A, )
2: VAR_012840 (L333V, chain A, )
3: VAR_034597 (K350R, chain A, )
4: VAR_012841 (C405R, chain A, )
5: VAR_034598 (R415C, chain A, )
6: VAR_034599 (P450R, chain A, )
7: VAR_012842 (G487R, chain A, )
8: VAR_015731 (G554R, chain A, )
9: VAR_014944 (H595Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_034596
S
284
T
MTRR_HUMAN
Polymorphism
2303080
A
S
257
T
2
UniProt
VAR_012840
L
360
V
MTRR_HUMAN
Polymorphism
10064631
A
L
333
V
3
UniProt
VAR_034597
K
377
R
MTRR_HUMAN
Polymorphism
162036
A
K
350
R
4
UniProt
VAR_012841
C
432
R
MTRR_HUMAN
Disease (HMAE)
---
A
C
405
R
5
UniProt
VAR_034598
R
442
C
MTRR_HUMAN
Polymorphism
2287780
A
R
415
C
6
UniProt
VAR_034599
P
477
R
MTRR_HUMAN
Polymorphism
16879334
A
P
450
R
7
UniProt
VAR_012842
G
514
R
MTRR_HUMAN
Disease (HMAE)
---
A
G
487
R
8
UniProt
VAR_015731
G
581
R
MTRR_HUMAN
Disease (HMAE)
---
A
G
554
R
9
UniProt
VAR_014944
H
622
Y
MTRR_HUMAN
Polymorphism
10380
A
H
595
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FAD_FR (A:272-533)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
MTRR_HUMAN
298-560
1
A:272-533
[
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Exons
(11, 11)
Info
All Exons
Exon 1.13h (A:217-257)
Exon 1.14b (A:272-301)
Exon 1.16a (A:302-353)
Exon 1.17b (A:353-382)
Exon 1.18b (A:383-443)
Exon 1.20c (A:443-457)
Exon 1.21b (A:457-519 (gaps))
Exon 1.23 (A:520-559)
Exon 1.24b (A:559-590)
Exon 1.25b (A:590-651 (gaps))
Exon 1.26c (A:651-698)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.12c/1.13h
02: Boundary 1.13h/1.14b
03: Boundary 1.14b/1.16a
04: Boundary 1.16a/1.17b
05: Boundary 1.17b/1.18b
06: Boundary 1.18b/1.20c
07: Boundary 1.20c/1.21b
08: Boundary 1.21b/1.23
09: Boundary 1.23/1.24b
10: Boundary 1.24b/1.25b
11: Boundary 1.25b/1.26c
12: Boundary 1.26c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5a
ENST00000264668
5a
ENSE00000846013
chr5:
7869217-7869302
86
MTRR_HUMAN
1-19
19
0
-
-
1.9b
ENST00000264668
9b
ENSE00001701081
chr5:
7870883-7871036
154
MTRR_HUMAN
19-70
52
0
-
-
1.11b
ENST00000264668
11b
ENSE00000846011
chr5:
7873486-7873639
154
MTRR_HUMAN
71-122
52
0
-
-
1.12c
ENST00000264668
12c
ENSE00001702893
chr5:
7875371-7875488
118
MTRR_HUMAN
122-161
40
0
-
-
1.13h
ENST00000264668
13h
ENSE00001758099
chr5:
7878057-7878435
379
MTRR_HUMAN
161-287
127
1
A:217-257
41
1.14b
ENST00000264668
14b
ENSE00001631075
chr5:
7883268-7883390
123
MTRR_HUMAN
288-328
41
1
A:272-301
30
1.16a
ENST00000264668
16a
ENSE00002154190
chr5:
7885814-7885967
154
MTRR_HUMAN
329-380
52
1
A:302-353
52
1.17b
ENST00000264668
17b
ENSE00001695000
chr5:
7886728-7886816
89
MTRR_HUMAN
380-409
30
1
A:353-382
30
1.18b
ENST00000264668
18b
ENSE00000846005
chr5:
7889208-7889388
181
MTRR_HUMAN
410-470
61
1
A:383-443
61
1.20c
ENST00000264668
20c
ENSE00000846004
chr5:
7891485-7891527
43
MTRR_HUMAN
470-484
15
1
A:443-457
15
1.21b
ENST00000264668
21b
ENSE00000846003
chr5:
7892840-7893026
187
MTRR_HUMAN
484-546
63
1
A:457-519 (gaps)
63
1.23
ENST00000264668
23
ENSE00000846002
chr5:
7895847-7895965
119
MTRR_HUMAN
547-586
40
1
A:520-559
40
1.24b
ENST00000264668
24b
ENSE00000846001
chr5:
7896977-7897069
93
MTRR_HUMAN
586-617
32
1
A:559-590
32
1.25b
ENST00000264668
25b
ENSE00000846000
chr5:
7897178-7897360
183
MTRR_HUMAN
617-678
62
1
A:590-651 (gaps)
62
1.26c
ENST00000264668
26c
ENSE00001820245
chr5:
7900027-7901237
1211
MTRR_HUMAN
678-725
48
1
A:651-698
48
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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