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2QT7
Asym. Unit
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Asym.Unit (37 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (33 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF THE MATURE ECTODOMAIN OF THE HUMAN RECEPTOR-TYPE PROTEIN-TYROSINE PHOSPHATASE IA-2 AT 1.30 ANGSTROMS
Authors
:
M. E. Primo, S. Klinke, M. P. Sica, F. A. Goldbaum, J. Jakoncic, E. Poskus, M. R. Ermacora
Date
:
01 Aug 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
Ia-2, Ica-512, Protein-Tyrosine Phosphatase, Transmembrane Protein, Diabetes, Autoimmunity, Proteolysis, Glycoprotein, Receptor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. E. Primo, S. Klinke, M. P. Sica, F. A. Goldbaum, J. Jakoncic, E. Poskus, M. R. Ermacora
Structure Of The Mature Ectodomain Of The Human Receptor-Type Protein-Tyrosine Phosphatase Ia-2
J. Biol. Chem. V. 283 4674 2008
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:76 , ASP A:81 , GLY A:98 , HOH A:329 , HOH A:336 , HOH A:359 , HOH A:369
BINDING SITE FOR RESIDUE CA A 202
2
AC2
SOFTWARE
GLU A:94 , GLN A:100 , HOH A:390 , HOH A:424 , HOH A:425
BINDING SITE FOR RESIDUE CA A 203
3
AC3
SOFTWARE
HIS A:50 , HOH A:307 , GLU B:94 , GLN B:100 , HOH B:304 , HOH B:440
BINDING SITE FOR RESIDUE CA B 201
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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]
Exons
(5, 10)
Info
All Exons
Exon 1.11 (A:21-31 | B:20-31)
Exon 1.12 (A:31-60 | B:31-60)
Exon 1.13c (A:60-87 | B:60-87)
Exon 1.13d (A:87-108 | B:87-108)
Exon 1.14b (A:109-109 | B:109-110)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.10/1.11
2: Boundary 1.11/1.12
3: Boundary 1.12/1.13c
4: Boundary 1.13c/1.13d
5: Boundary 1.13d/1.14b
6: Boundary 1.14b/1.15b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000295718
1b
ENSE00001843122
chr2:
220174295-220173940
356
PTPRN_HUMAN
1-39
39
0
-
-
1.4c
ENST00000295718
4c
ENSE00001609781
chr2:
220172564-220172514
51
PTPRN_HUMAN
39-56
18
0
-
-
1.4f
ENST00000295718
4f
ENSE00001646399
chr2:
220172279-220172166
114
PTPRN_HUMAN
56-94
39
0
-
-
1.6b
ENST00000295718
6b
ENSE00001689890
chr2:
220168553-220168457
97
PTPRN_HUMAN
94-126
33
0
-
-
1.7e
ENST00000295718
7e
ENSE00001669026
chr2:
220167559-220167298
262
PTPRN_HUMAN
126-213
88
0
-
-
1.8c
ENST00000295718
8c
ENSE00001779946
chr2:
220167213-220166859
355
PTPRN_HUMAN
214-332
119
0
-
-
1.9
ENST00000295718
9
ENSE00001803105
chr2:
220166441-220166310
132
PTPRN_HUMAN
332-376
45
0
-
-
1.10
ENST00000295718
10
ENSE00001680212
chr2:
220165699-220165665
35
PTPRN_HUMAN
376-387
12
0
-
-
1.11
ENST00000295718
11
ENSE00001790646
chr2:
220164981-220164707
275
PTPRN_HUMAN
388-479
92
2
A:21-31
B:20-31
11
12
1.12
ENST00000295718
12
ENSE00001792556
chr2:
220164508-220164422
87
PTPRN_HUMAN
479-508
30
2
A:31-60
B:31-60
30
30
1.13c
ENST00000295718
13c
ENSE00001663640
chr2:
220164106-220164027
80
PTPRN_HUMAN
508-535
28
2
A:60-87
B:60-87
28
28
1.13d
ENST00000295718
13d
ENSE00001722334
chr2:
220163833-220163769
65
PTPRN_HUMAN
535-556
22
2
A:87-108
B:87-108
22
22
1.14b
ENST00000295718
14b
ENSE00001641294
chr2:
220162825-220162607
219
PTPRN_HUMAN
557-629
73
2
A:109-109
B:109-110
1
2
1.15b
ENST00000295718
15b
ENSE00001804219
chr2:
220162155-220161955
201
PTPRN_HUMAN
630-696
67
0
-
-
1.16
ENST00000295718
16
ENSE00001596701
chr2:
220161854-220161707
148
PTPRN_HUMAN
697-746
50
0
-
-
1.17a
ENST00000295718
17a
ENSE00001787617
chr2:
220161544-220161471
74
PTPRN_HUMAN
746-770
25
0
-
-
1.18
ENST00000295718
18
ENSE00001642327
chr2:
220161238-220161161
78
PTPRN_HUMAN
771-796
26
0
-
-
1.19a
ENST00000295718
19a
ENSE00001671885
chr2:
220161067-220160948
120
PTPRN_HUMAN
797-836
40
0
-
-
1.19d
ENST00000295718
19d
ENSE00001770552
chr2:
220159863-220159697
167
PTPRN_HUMAN
837-892
56
0
-
-
1.20b
ENST00000295718
20b
ENSE00001650195
chr2:
220156245-220156192
54
PTPRN_HUMAN
892-910
19
0
-
-
1.21
ENST00000295718
21
ENSE00001687150
chr2:
220155612-220155548
65
PTPRN_HUMAN
910-932
23
0
-
-
1.22
ENST00000295718
22
ENSE00001766807
chr2:
220155333-220155260
74
PTPRN_HUMAN
932-956
25
0
-
-
1.23e
ENST00000295718
23e
ENSE00001775602
chr2:
220155019-220154345
675
PTPRN_HUMAN
957-979
23
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Receptor_IA_2_2qt7B01 (B:20-110)
1b: PFAM_Receptor_IA_2_2qt7B02 (B:20-110)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Receptor_IA-2]
(4)
Family
:
Receptor_IA-2
(4)
Homo sapiens (Human)
(4)
1a
Receptor_IA-2-2qt7B01
B:20-110
1b
Receptor_IA-2-2qt7B02
B:20-110
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Asymmetric Unit 1
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Asym.Unit (37 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (33 KB)
Header - Biol.Unit 2
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