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2QT6
Biol. Unit 2
Info
Asym.Unit (216 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE DETERMINATION OF A BLUE LACCASE FROM LENTINUS TIGRINUS
Authors
:
M. Ferraroni, F. Briganti, A. Scozzafava
Date
:
01 Aug 07 (Deposition) - 20 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ferraroni, N. M. Myasoedova, V. Schmatchenko, A. A. Leontievsky, L. A. Golovleva, A. Scozzafava, F. Briganti
Crystal Structure Of A Blue Laccase From Lentinus Tigrinus: Evidences For Intermediates In The Molecular Oxygen Reductive Splitting By Multicopper Oxidases.
Bmc Struct. Biol. V. 7 60 2007
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: DI(N-ACETYL-D-GLUCOSAMINE) (CBSa)
3b: DI(N-ACETYL-D-GLUCOSAMINE) (CBSb)
3c: DI(N-ACETYL-D-GLUCOSAMINE) (CBSc)
3d: DI(N-ACETYL-D-GLUCOSAMINE) (CBSd)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
5a: COPPER (II) ION (CUa)
5b: COPPER (II) ION (CUb)
5c: COPPER (II) ION (CUc)
5d: COPPER (II) ION (CUd)
5e: COPPER (II) ION (CUe)
5f: COPPER (II) ION (CUf)
5g: COPPER (II) ION (CUg)
5h: COPPER (II) ION (CUh)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
7a: ALPHA-D-MANNOSE (MANa)
7b: ALPHA-D-MANNOSE (MANb)
8a: N-ACETYL-D-GLUCOSAMINE (NAGa)
9a: PEROXIDE ION (PERa)
10a: L(+)-TARTARIC ACID (TLAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CBS
2
Ligand/Ion
DI(N-ACETYL-D-GLUCOSAMINE)
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
CU
-1
Ligand/Ion
COPPER (II) ION
6
GOL
1
Ligand/Ion
GLYCEROL
7
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
8
NAG
-1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
PER
1
Ligand/Ion
PEROXIDE ION
10
TLA
-1
Ligand/Ion
L(+)-TARTARIC ACID
[
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]
Sites
(15, 15)
Info
All Sites
01: AC9 (SOFTWARE)
02: BC5 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
12: CC9 (SOFTWARE)
13: DC3 (SOFTWARE)
14: DC6 (SOFTWARE)
15: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC9
SOFTWARE
GLN B:318 , ASN B:324 , ASN B:326 , THR B:382 , PRO B:384 , ASN B:435 , HOH B:3863 , HOH B:3898 , HOH B:4456 , HOH B:4528 , HOH B:4548
BINDING SITE FOR RESIDUE CBS B 705
02
BC5
SOFTWARE
HIS B:394 , CYS B:452 , ILE B:454 , HIS B:457 , PHE B:462
BINDING SITE FOR RESIDUE CU B 499
03
BC6
SOFTWARE
HIS B:64 , HIS B:66 , HIS B:397 , HIS B:399 , PER B:503 , HOH B:3988
BINDING SITE FOR RESIDUE CU B 500
04
BC7
SOFTWARE
HIS B:111 , HIS B:399 , HIS B:451 , PER B:503
BINDING SITE FOR RESIDUE CU B 501
05
BC8
SOFTWARE
HIS B:66 , TRP B:107 , HIS B:109 , HIS B:453 , PER B:503
BINDING SITE FOR RESIDUE CU B 502
06
BC9
SOFTWARE
SER B:375 , ASP B:469 , ASN B:472 , HOH B:3957 , HOH B:4376 , HOH B:4485
BINDING SITE FOR RESIDUE CA B 3712
07
CC2
SOFTWARE
ARG B:22 , ALA B:23 , ASN B:54 , MET B:57 , HIS B:153 , VAL B:154 , ALA B:155 , LEU B:158 , GLN B:229 , HIS B:305 , LEU B:307 , SER B:309 , ASP B:418 , BMA B:706 , HOH B:3999 , HOH B:4114 , HOH B:4273 , HOH B:4671 , HOH B:4672 , HOH B:4674 , HOH B:4675 , HOH B:4677 , HOH B:4678 , HOH B:4682 , HOH B:4685
BINDING SITE FOR RESIDUE CBS B 704
08
CC3
SOFTWARE
CBS B:704 , BMA B:707 , BMA B:708 , HOH B:4045 , HOH B:4680 , HOH B:4683 , HOH B:4684 , HOH B:4688 , HOH B:4690
BINDING SITE FOR RESIDUE BMA B 706
09
CC4
SOFTWARE
ASP B:303 , BMA B:706 , HOH B:4679 , HOH B:4687 , HOH B:4694 , HOH B:4698
BINDING SITE FOR RESIDUE BMA B 707
10
CC5
SOFTWARE
BMA B:706 , BMA B:709 , MAN B:3711 , HOH B:4683 , HOH B:4691 , HOH B:4692
BINDING SITE FOR RESIDUE BMA B 708
11
CC6
SOFTWARE
PRO B:230 , VAL B:231 , THR B:232 , BMA B:708 , HOH B:4401 , HOH B:4413 , HOH B:4653 , HOH B:4658 , HOH B:4667 , HOH B:4673 , HOH B:4676 , HOH B:4686 , HOH B:4688 , HOH B:4689 , HOH B:4695
BINDING SITE FOR RESIDUE BMA B 709
12
CC9
SOFTWARE
PHE B:20 , HIS B:153 , BMA B:708 , HOH B:4669 , HOH B:4690 , HOH B:4696
BINDING SITE FOR RESIDUE MAN B 3711
13
DC3
SOFTWARE
MET B:40 , GLY B:41 , GLY B:101 , HOH B:4313 , HOH B:4571
BINDING SITE FOR RESIDUE CL B 3718
14
DC6
SOFTWARE
HIS B:64 , HIS B:66 , HIS B:109 , HIS B:111 , HIS B:397 , HIS B:399 , HIS B:451 , HIS B:453 , CU B:500 , CU B:501 , CU B:502 , HOH B:4069
BINDING SITE FOR RESIDUE PER B 503
15
DC9
SOFTWARE
ASN B:262 , HOH B:3973 , HOH B:4021 , HOH B:4071 , HOH B:4102 , HOH B:4130 , HOH B:4275
BINDING SITE FOR RESIDUE GOL B 3710
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2qt6a1 (A:1-131)
1b: SCOP_d2qt6a2 (A:132-299)
1c: SCOP_d2qt6a3 (A:300-498)
1d: SCOP_d2qt6b1 (B:1-131)
1e: SCOP_d2qt6b2 (B:132-299)
1f: SCOP_d2qt6b3 (B:300-498)
View:
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Classes
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)
(
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Folds
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(
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Superfamilies
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Lentinus tigrinus [TaxId: 5365]
(1)
1a
d2qt6a1
A:1-131
1b
d2qt6a2
A:132-299
1c
d2qt6a3
A:300-498
1d
d2qt6b1
B:1-131
1e
d2qt6b2
B:132-299
1f
d2qt6b3
B:300-498
[
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]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2qt6A01 (A:1-132)
1b: CATH_2qt6B01 (B:1-132)
1c: CATH_2qt6A02 (A:133-308)
1d: CATH_2qt6B02 (B:133-308)
1e: CATH_2qt6A03 (A:309-498)
1f: CATH_2qt6B03 (B:309-498)
View:
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(
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Lentinus tigrinus. Organism_taxid: 5365. Strain: 8/18
(1)
1a
2qt6A01
A:1-132
1b
2qt6B01
B:1-132
1c
2qt6A02
A:133-308
1d
2qt6B02
B:133-308
1e
2qt6A03
A:309-498
1f
2qt6B03
B:309-498
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_2qt6B01 (B:142-284)
1b: PFAM_Cu_oxidase_2qt6B02 (B:142-284)
2a: PFAM_Cu_oxidase_2_2qt6B03 (B:343-463)
2b: PFAM_Cu_oxidase_2_2qt6B04 (B:343-463)
3a: PFAM_Cu_oxidase_3_2qt6B05 (B:9-131)
3b: PFAM_Cu_oxidase_3_2qt6B06 (B:9-131)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
CU_oxidase
(192)
Family
:
Cu-oxidase
(74)
Lentinus tigrinus
(1)
1a
Cu-oxidase-2qt6B01
B:142-284
1b
Cu-oxidase-2qt6B02
B:142-284
Family
:
Cu-oxidase_2
(24)
Lentinus tigrinus
(1)
2a
Cu-oxidase_2-2qt6B03
B:343-463
2b
Cu-oxidase_2-2qt6B04
B:343-463
Family
:
Cu-oxidase_3
(79)
Lentinus tigrinus
(1)
3a
Cu-oxidase_3-2qt6B05
B:9-131
3b
Cu-oxidase_3-2qt6B06
B:9-131
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