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2QT6
Biol. Unit 1
Info
Asym.Unit (216 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE DETERMINATION OF A BLUE LACCASE FROM LENTINUS TIGRINUS
Authors
:
M. Ferraroni, F. Briganti, A. Scozzafava
Date
:
01 Aug 07 (Deposition) - 20 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ferraroni, N. M. Myasoedova, V. Schmatchenko, A. A. Leontievsky, L. A. Golovleva, A. Scozzafava, F. Briganti
Crystal Structure Of A Blue Laccase From Lentinus Tigrinus: Evidences For Intermediates In The Molecular Oxygen Reductive Splitting By Multicopper Oxidases.
Bmc Struct. Biol. V. 7 60 2007
[
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Hetero Components
(6, 10)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: DI(N-ACETYL-D-GLUCOSAMINE) (CBSa)
3b: DI(N-ACETYL-D-GLUCOSAMINE) (CBSb)
3c: DI(N-ACETYL-D-GLUCOSAMINE) (CBSc)
3d: DI(N-ACETYL-D-GLUCOSAMINE) (CBSd)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
5a: COPPER (II) ION (CUa)
5b: COPPER (II) ION (CUb)
5c: COPPER (II) ION (CUc)
5d: COPPER (II) ION (CUd)
5e: COPPER (II) ION (CUe)
5f: COPPER (II) ION (CUf)
5g: COPPER (II) ION (CUg)
5h: COPPER (II) ION (CUh)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
7a: ALPHA-D-MANNOSE (MANa)
7b: ALPHA-D-MANNOSE (MANb)
8a: N-ACETYL-D-GLUCOSAMINE (NAGa)
9a: PEROXIDE ION (PERa)
10a: L(+)-TARTARIC ACID (TLAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CBS
2
Ligand/Ion
DI(N-ACETYL-D-GLUCOSAMINE)
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
CU
-1
Ligand/Ion
COPPER (II) ION
6
GOL
1
Ligand/Ion
GLYCEROL
7
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
8
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
PER
-1
Ligand/Ion
PEROXIDE ION
10
TLA
1
Ligand/Ion
L(+)-TARTARIC ACID
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC4 (SOFTWARE)
13: CC1 (SOFTWARE)
14: CC7 (SOFTWARE)
15: CC8 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC4 (SOFTWARE)
19: DC5 (SOFTWARE)
20: DC7 (SOFTWARE)
21: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:22 , ALA A:23 , ASN A:54 , MET A:57 , HIS A:153 , VAL A:154 , ALA A:155 , LEU A:158 , GLN A:229 , HIS A:305 , LEU A:307 , SER A:309 , ASP A:418 , BMA A:606 , HOH A:4021 , HOH A:4100 , HOH A:4168 , HOH A:4844 , HOH A:4852 , HOH A:4853 , HOH A:4854 , HOH A:4856 , HOH A:4859 , HOH A:4861
BINDING SITE FOR RESIDUE CBS A 603
02
AC2
SOFTWARE
CBS A:603 , BMA A:607 , BMA A:609 , HOH A:4177 , HOH A:4839 , HOH A:4857 , HOH A:4865 , HOH A:4867 , HOH A:4869
BINDING SITE FOR RESIDUE BMA A 606
03
AC3
SOFTWARE
BMA A:606 , BMA A:608 , MAN A:3612 , HOH A:4841 , HOH A:4869 , HOH A:4871
BINDING SITE FOR RESIDUE BMA A 607
04
AC4
SOFTWARE
PHE A:20 , SER A:179 , BMA A:607 , HOH A:4842 , HOH A:4849 , HOH A:4860 , HOH A:4866
BINDING SITE FOR RESIDUE BMA A 608
05
AC5
SOFTWARE
BMA A:606 , HOH A:4399 , HOH A:4416 , HOH A:4843 , HOH A:4845 , HOH A:4848 , HOH A:4851 , HOH A:4868 , HOH A:4870
BINDING SITE FOR RESIDUE BMA A 609
06
AC6
SOFTWARE
GLN A:318 , ASN A:324 , THR A:382 , ASN A:435 , HOH A:3740 , HOH A:3789 , HOH A:3900 , HOH A:3906 , HOH A:4074 , HOH A:4091 , HOH A:4102 , HOH A:4263 , HOH A:4332 , HOH A:4333 , HOH A:4365 , HOH A:4734
BINDING SITE FOR RESIDUE CBS A 604
07
AC7
SOFTWARE
SER A:375 , ASN A:376 , PRO A:445 , ASP A:469 , TLA A:3610 , CA A:3713 , HOH A:4121 , HOH A:4129 , HOH A:4279 , HOH A:4361 , HOH A:4479 , HOH A:4508 , HOH A:4572 , HOH A:4740 , HOH A:4778
BINDING SITE FOR RESIDUE NAG A 605
08
AC8
SOFTWARE
PRO A:230 , VAL A:231 , THR A:232 , BMA A:607 , HOH A:3725 , HOH A:4836 , HOH A:4840 , HOH A:4855 , HOH A:4858 , HOH A:4863 , HOH A:4867 , HOH A:4873 , HOH A:4874
BINDING SITE FOR RESIDUE MAN A 3612
09
BC1
SOFTWARE
HIS A:394 , CYS A:452 , ILE A:454 , HIS A:457 , PHE A:462
BINDING SITE FOR RESIDUE CU A 499
10
BC2
SOFTWARE
HIS A:64 , HIS A:66 , HIS A:397 , HIS A:399 , HOH A:4017 , HOH A:4600
BINDING SITE FOR RESIDUE CU A 500
11
BC3
SOFTWARE
HIS A:111 , HIS A:399 , HIS A:451 , HOH A:3898 , HOH A:4600
BINDING SITE FOR RESIDUE CU A 501
12
BC4
SOFTWARE
HIS A:66 , TRP A:107 , HIS A:109 , HIS A:453 , HOH A:3898 , HOH A:4600
BINDING SITE FOR RESIDUE CU A 502
13
CC1
SOFTWARE
ASP A:469 , ASN A:472 , NAG A:605 , TLA A:3610 , HOH A:4121 , HOH A:4129
BINDING SITE FOR RESIDUE CA A 3713
14
CC7
SOFTWARE
ASP A:253 , HOH A:4113 , HOH A:4130
BINDING SITE FOR RESIDUE CA A 3714
15
CC8
SOFTWARE
ASP A:253 , HOH A:4115 , HOH A:4120 , HOH A:4275
BINDING SITE FOR RESIDUE CA A 3715
16
DC1
SOFTWARE
GLU A:341 , SER A:367 , HOH A:3973 , HOH A:4011 , HOH A:4030 , HOH A:4550
BINDING SITE FOR RESIDUE CA A 3716
17
DC2
SOFTWARE
LYS A:157 , HOH A:4240 , HOH A:4307 , HOH A:4446 , HOH A:4454 , HOH A:4547 , HOH A:4770
BINDING SITE FOR RESIDUE CA A 3717
18
DC4
SOFTWARE
MET A:40 , GLY A:41 , GLY A:101 , HOH A:4440 , HOH A:4494 , HOH A:4594
BINDING SITE FOR RESIDUE CL A 3719
19
DC5
SOFTWARE
HIS A:401 , GLN A:441 , ASP A:443 , ASN A:444 , HOH A:4008 , HOH A:4329 , HOH A:4716
BINDING SITE FOR RESIDUE CL A 3720
20
DC7
SOFTWARE
SER A:375 , ASP A:469 , PRO A:471 , ASN A:472 , NAG A:605 , CA A:3713 , HOH A:4386 , HOH A:4419 , HOH A:4620 , HOH A:4623 , HOH A:4660
BINDING SITE FOR RESIDUE TLA A 3610
21
DC8
SOFTWARE
ALA A:80 , HIS A:111 , SER A:113 , PHE A:449 , LEU A:458 , HOH A:4090 , HOH A:4302 , HOH A:4342 , HOH A:4383 , HOH A:4717
BINDING SITE FOR RESIDUE GOL A 3611
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2qt6a1 (A:1-131)
1b: SCOP_d2qt6a2 (A:132-299)
1c: SCOP_d2qt6a3 (A:300-498)
1d: SCOP_d2qt6b1 (B:1-131)
1e: SCOP_d2qt6b2 (B:132-299)
1f: SCOP_d2qt6b3 (B:300-498)
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Classes
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)
(
)
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)
(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Lentinus tigrinus [TaxId: 5365]
(1)
1a
d2qt6a1
A:1-131
1b
d2qt6a2
A:132-299
1c
d2qt6a3
A:300-498
1d
d2qt6b1
B:1-131
1e
d2qt6b2
B:132-299
1f
d2qt6b3
B:300-498
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2qt6A01 (A:1-132)
1b: CATH_2qt6B01 (B:1-132)
1c: CATH_2qt6A02 (A:133-308)
1d: CATH_2qt6B02 (B:133-308)
1e: CATH_2qt6A03 (A:309-498)
1f: CATH_2qt6B03 (B:309-498)
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)
(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Lentinus tigrinus. Organism_taxid: 5365. Strain: 8/18
(1)
1a
2qt6A01
A:1-132
1b
2qt6B01
B:1-132
1c
2qt6A02
A:133-308
1d
2qt6B02
B:133-308
1e
2qt6A03
A:309-498
1f
2qt6B03
B:309-498
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_2qt6B01 (B:142-284)
1b: PFAM_Cu_oxidase_2qt6B02 (B:142-284)
2a: PFAM_Cu_oxidase_2_2qt6B03 (B:343-463)
2b: PFAM_Cu_oxidase_2_2qt6B04 (B:343-463)
3a: PFAM_Cu_oxidase_3_2qt6B05 (B:9-131)
3b: PFAM_Cu_oxidase_3_2qt6B06 (B:9-131)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
CU_oxidase
(192)
Family
:
Cu-oxidase
(74)
Lentinus tigrinus
(1)
1a
Cu-oxidase-2qt6B01
B:142-284
1b
Cu-oxidase-2qt6B02
B:142-284
Family
:
Cu-oxidase_2
(24)
Lentinus tigrinus
(1)
2a
Cu-oxidase_2-2qt6B03
B:343-463
2b
Cu-oxidase_2-2qt6B04
B:343-463
Family
:
Cu-oxidase_3
(79)
Lentinus tigrinus
(1)
3a
Cu-oxidase_3-2qt6B05
B:9-131
3b
Cu-oxidase_3-2qt6B06
B:9-131
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Asymmetric Unit 1
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