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2QT6
Asym. Unit
Info
Asym.Unit (216 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE DETERMINATION OF A BLUE LACCASE FROM LENTINUS TIGRINUS
Authors
:
M. Ferraroni, F. Briganti, A. Scozzafava
Date
:
01 Aug 07 (Deposition) - 20 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ferraroni, N. M. Myasoedova, V. Schmatchenko, A. A. Leontievsky, L. A. Golovleva, A. Scozzafava, F. Briganti
Crystal Structure Of A Blue Laccase From Lentinus Tigrinus: Evidences For Intermediates In The Molecular Oxygen Reductive Splitting By Multicopper Oxidases.
Bmc Struct. Biol. V. 7 60 2007
[
close entry info
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Hetero Components
(10, 36)
Info
All Hetero Components
01a: BETA-D-MANNOSE (BMAa)
01b: BETA-D-MANNOSE (BMAb)
01c: BETA-D-MANNOSE (BMAc)
01d: BETA-D-MANNOSE (BMAd)
01e: BETA-D-MANNOSE (BMAe)
01f: BETA-D-MANNOSE (BMAf)
01g: BETA-D-MANNOSE (BMAg)
01h: BETA-D-MANNOSE (BMAh)
02a: CALCIUM ION (CAa)
02b: CALCIUM ION (CAb)
02c: CALCIUM ION (CAc)
02d: CALCIUM ION (CAd)
02e: CALCIUM ION (CAe)
02f: CALCIUM ION (CAf)
03a: DI(N-ACETYL-D-GLUCOSAMINE) (CBSa)
03b: DI(N-ACETYL-D-GLUCOSAMINE) (CBSb)
03c: DI(N-ACETYL-D-GLUCOSAMINE) (CBSc)
03d: DI(N-ACETYL-D-GLUCOSAMINE) (CBSd)
04a: CHLORIDE ION (CLa)
04b: CHLORIDE ION (CLb)
04c: CHLORIDE ION (CLc)
05a: COPPER (II) ION (CUa)
05b: COPPER (II) ION (CUb)
05c: COPPER (II) ION (CUc)
05d: COPPER (II) ION (CUd)
05e: COPPER (II) ION (CUe)
05f: COPPER (II) ION (CUf)
05g: COPPER (II) ION (CUg)
05h: COPPER (II) ION (CUh)
06a: GLYCEROL (GOLa)
06b: GLYCEROL (GOLb)
07a: ALPHA-D-MANNOSE (MANa)
07b: ALPHA-D-MANNOSE (MANb)
08a: N-ACETYL-D-GLUCOSAMINE (NAGa)
09a: PEROXIDE ION (PERa)
10a: L(+)-TARTARIC ACID (TLAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
8
Ligand/Ion
BETA-D-MANNOSE
2
CA
6
Ligand/Ion
CALCIUM ION
3
CBS
4
Ligand/Ion
DI(N-ACETYL-D-GLUCOSAMINE)
4
CL
3
Ligand/Ion
CHLORIDE ION
5
CU
8
Ligand/Ion
COPPER (II) ION
6
GOL
2
Ligand/Ion
GLYCEROL
7
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
8
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
PER
1
Ligand/Ion
PEROXIDE ION
10
TLA
1
Ligand/Ion
L(+)-TARTARIC ACID
[
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]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:22 , ALA A:23 , ASN A:54 , MET A:57 , HIS A:153 , VAL A:154 , ALA A:155 , LEU A:158 , GLN A:229 , HIS A:305 , LEU A:307 , SER A:309 , ASP A:418 , BMA A:606 , HOH A:4021 , HOH A:4100 , HOH A:4168 , HOH A:4844 , HOH A:4852 , HOH A:4853 , HOH A:4854 , HOH A:4856 , HOH A:4859 , HOH A:4861
BINDING SITE FOR RESIDUE CBS A 603
02
AC2
SOFTWARE
CBS A:603 , BMA A:607 , BMA A:609 , HOH A:4177 , HOH A:4839 , HOH A:4857 , HOH A:4865 , HOH A:4867 , HOH A:4869
BINDING SITE FOR RESIDUE BMA A 606
03
AC3
SOFTWARE
BMA A:606 , BMA A:608 , MAN A:3612 , HOH A:4841 , HOH A:4869 , HOH A:4871
BINDING SITE FOR RESIDUE BMA A 607
04
AC4
SOFTWARE
PHE A:20 , SER A:179 , BMA A:607 , HOH A:4842 , HOH A:4849 , HOH A:4860 , HOH A:4866
BINDING SITE FOR RESIDUE BMA A 608
05
AC5
SOFTWARE
BMA A:606 , HOH A:4399 , HOH A:4416 , HOH A:4843 , HOH A:4845 , HOH A:4848 , HOH A:4851 , HOH A:4868 , HOH A:4870
BINDING SITE FOR RESIDUE BMA A 609
06
AC6
SOFTWARE
GLN A:318 , ASN A:324 , THR A:382 , ASN A:435 , HOH A:3740 , HOH A:3789 , HOH A:3900 , HOH A:3906 , HOH A:4074 , HOH A:4091 , HOH A:4102 , HOH A:4263 , HOH A:4332 , HOH A:4333 , HOH A:4365 , HOH A:4734
BINDING SITE FOR RESIDUE CBS A 604
07
AC7
SOFTWARE
SER A:375 , ASN A:376 , PRO A:445 , ASP A:469 , TLA A:3610 , CA A:3713 , HOH A:4121 , HOH A:4129 , HOH A:4279 , HOH A:4361 , HOH A:4479 , HOH A:4508 , HOH A:4572 , HOH A:4740 , HOH A:4778
BINDING SITE FOR RESIDUE NAG A 605
08
AC8
SOFTWARE
PRO A:230 , VAL A:231 , THR A:232 , BMA A:607 , HOH A:3725 , HOH A:4836 , HOH A:4840 , HOH A:4855 , HOH A:4858 , HOH A:4863 , HOH A:4867 , HOH A:4873 , HOH A:4874
BINDING SITE FOR RESIDUE MAN A 3612
09
AC9
SOFTWARE
GLN B:318 , ASN B:324 , ASN B:326 , THR B:382 , PRO B:384 , ASN B:435 , HOH B:3863 , HOH B:3898 , HOH B:4456 , HOH B:4528 , HOH B:4548
BINDING SITE FOR RESIDUE CBS B 705
10
BC1
SOFTWARE
HIS A:394 , CYS A:452 , ILE A:454 , HIS A:457 , PHE A:462
BINDING SITE FOR RESIDUE CU A 499
11
BC2
SOFTWARE
HIS A:64 , HIS A:66 , HIS A:397 , HIS A:399 , HOH A:4017 , HOH A:4600
BINDING SITE FOR RESIDUE CU A 500
12
BC3
SOFTWARE
HIS A:111 , HIS A:399 , HIS A:451 , HOH A:3898 , HOH A:4600
BINDING SITE FOR RESIDUE CU A 501
13
BC4
SOFTWARE
HIS A:66 , TRP A:107 , HIS A:109 , HIS A:453 , HOH A:3898 , HOH A:4600
BINDING SITE FOR RESIDUE CU A 502
14
BC5
SOFTWARE
HIS B:394 , CYS B:452 , ILE B:454 , HIS B:457 , PHE B:462
BINDING SITE FOR RESIDUE CU B 499
15
BC6
SOFTWARE
HIS B:64 , HIS B:66 , HIS B:397 , HIS B:399 , PER B:503 , HOH B:3988
BINDING SITE FOR RESIDUE CU B 500
16
BC7
SOFTWARE
HIS B:111 , HIS B:399 , HIS B:451 , PER B:503
BINDING SITE FOR RESIDUE CU B 501
17
BC8
SOFTWARE
HIS B:66 , TRP B:107 , HIS B:109 , HIS B:453 , PER B:503
BINDING SITE FOR RESIDUE CU B 502
18
BC9
SOFTWARE
SER B:375 , ASP B:469 , ASN B:472 , HOH B:3957 , HOH B:4376 , HOH B:4485
BINDING SITE FOR RESIDUE CA B 3712
19
CC1
SOFTWARE
ASP A:469 , ASN A:472 , NAG A:605 , TLA A:3610 , HOH A:4121 , HOH A:4129
BINDING SITE FOR RESIDUE CA A 3713
20
CC2
SOFTWARE
ARG B:22 , ALA B:23 , ASN B:54 , MET B:57 , HIS B:153 , VAL B:154 , ALA B:155 , LEU B:158 , GLN B:229 , HIS B:305 , LEU B:307 , SER B:309 , ASP B:418 , BMA B:706 , HOH B:3999 , HOH B:4114 , HOH B:4273 , HOH B:4671 , HOH B:4672 , HOH B:4674 , HOH B:4675 , HOH B:4677 , HOH B:4678 , HOH B:4682 , HOH B:4685
BINDING SITE FOR RESIDUE CBS B 704
21
CC3
SOFTWARE
CBS B:704 , BMA B:707 , BMA B:708 , HOH B:4045 , HOH B:4680 , HOH B:4683 , HOH B:4684 , HOH B:4688 , HOH B:4690
BINDING SITE FOR RESIDUE BMA B 706
22
CC4
SOFTWARE
ASP B:303 , BMA B:706 , HOH B:4679 , HOH B:4687 , HOH B:4694 , HOH B:4698
BINDING SITE FOR RESIDUE BMA B 707
23
CC5
SOFTWARE
BMA B:706 , BMA B:709 , MAN B:3711 , HOH B:4683 , HOH B:4691 , HOH B:4692
BINDING SITE FOR RESIDUE BMA B 708
24
CC6
SOFTWARE
PRO B:230 , VAL B:231 , THR B:232 , BMA B:708 , HOH B:4401 , HOH B:4413 , HOH B:4653 , HOH B:4658 , HOH B:4667 , HOH B:4673 , HOH B:4676 , HOH B:4686 , HOH B:4688 , HOH B:4689 , HOH B:4695
BINDING SITE FOR RESIDUE BMA B 709
25
CC7
SOFTWARE
ASP A:253 , HOH A:4113 , HOH A:4130
BINDING SITE FOR RESIDUE CA A 3714
26
CC8
SOFTWARE
ASP A:253 , HOH A:4115 , HOH A:4120 , HOH A:4275
BINDING SITE FOR RESIDUE CA A 3715
27
CC9
SOFTWARE
PHE B:20 , HIS B:153 , BMA B:708 , HOH B:4669 , HOH B:4690 , HOH B:4696
BINDING SITE FOR RESIDUE MAN B 3711
28
DC1
SOFTWARE
GLU A:341 , SER A:367 , HOH A:3973 , HOH A:4011 , HOH A:4030 , HOH A:4550
BINDING SITE FOR RESIDUE CA A 3716
29
DC2
SOFTWARE
LYS A:157 , HOH A:4240 , HOH A:4307 , HOH A:4446 , HOH A:4454 , HOH A:4547 , HOH A:4770
BINDING SITE FOR RESIDUE CA A 3717
30
DC3
SOFTWARE
MET B:40 , GLY B:41 , GLY B:101 , HOH B:4313 , HOH B:4571
BINDING SITE FOR RESIDUE CL B 3718
31
DC4
SOFTWARE
MET A:40 , GLY A:41 , GLY A:101 , HOH A:4440 , HOH A:4494 , HOH A:4594
BINDING SITE FOR RESIDUE CL A 3719
32
DC5
SOFTWARE
HIS A:401 , GLN A:441 , ASP A:443 , ASN A:444 , HOH A:4008 , HOH A:4329 , HOH A:4716
BINDING SITE FOR RESIDUE CL A 3720
33
DC6
SOFTWARE
HIS B:64 , HIS B:66 , HIS B:109 , HIS B:111 , HIS B:397 , HIS B:399 , HIS B:451 , HIS B:453 , CU B:500 , CU B:501 , CU B:502 , HOH B:4069
BINDING SITE FOR RESIDUE PER B 503
34
DC7
SOFTWARE
SER A:375 , ASP A:469 , PRO A:471 , ASN A:472 , NAG A:605 , CA A:3713 , HOH A:4386 , HOH A:4419 , HOH A:4620 , HOH A:4623 , HOH A:4660
BINDING SITE FOR RESIDUE TLA A 3610
35
DC8
SOFTWARE
ALA A:80 , HIS A:111 , SER A:113 , PHE A:449 , LEU A:458 , HOH A:4090 , HOH A:4302 , HOH A:4342 , HOH A:4383 , HOH A:4717
BINDING SITE FOR RESIDUE GOL A 3611
36
DC9
SOFTWARE
ASN B:262 , HOH B:3973 , HOH B:4021 , HOH B:4071 , HOH B:4102 , HOH B:4130 , HOH B:4275
BINDING SITE FOR RESIDUE GOL B 3710
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2qt6a1 (A:1-131)
1b: SCOP_d2qt6a2 (A:132-299)
1c: SCOP_d2qt6a3 (A:300-498)
1d: SCOP_d2qt6b1 (B:1-131)
1e: SCOP_d2qt6b2 (B:132-299)
1f: SCOP_d2qt6b3 (B:300-498)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Lentinus tigrinus [TaxId: 5365]
(1)
1a
d2qt6a1
A:1-131
1b
d2qt6a2
A:132-299
1c
d2qt6a3
A:300-498
1d
d2qt6b1
B:1-131
1e
d2qt6b2
B:132-299
1f
d2qt6b3
B:300-498
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2qt6A01 (A:1-132)
1b: CATH_2qt6B01 (B:1-132)
1c: CATH_2qt6A02 (A:133-308)
1d: CATH_2qt6B02 (B:133-308)
1e: CATH_2qt6A03 (A:309-498)
1f: CATH_2qt6B03 (B:309-498)
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Architectures
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Lentinus tigrinus. Organism_taxid: 5365. Strain: 8/18
(1)
1a
2qt6A01
A:1-132
1b
2qt6B01
B:1-132
1c
2qt6A02
A:133-308
1d
2qt6B02
B:133-308
1e
2qt6A03
A:309-498
1f
2qt6B03
B:309-498
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_2qt6B01 (B:142-284)
1b: PFAM_Cu_oxidase_2qt6B02 (B:142-284)
2a: PFAM_Cu_oxidase_2_2qt6B03 (B:343-463)
2b: PFAM_Cu_oxidase_2_2qt6B04 (B:343-463)
3a: PFAM_Cu_oxidase_3_2qt6B05 (B:9-131)
3b: PFAM_Cu_oxidase_3_2qt6B06 (B:9-131)
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Clan
:
CU_oxidase
(192)
Family
:
Cu-oxidase
(74)
Lentinus tigrinus
(1)
1a
Cu-oxidase-2qt6B01
B:142-284
1b
Cu-oxidase-2qt6B02
B:142-284
Family
:
Cu-oxidase_2
(24)
Lentinus tigrinus
(1)
2a
Cu-oxidase_2-2qt6B03
B:343-463
2b
Cu-oxidase_2-2qt6B04
B:343-463
Family
:
Cu-oxidase_3
(79)
Lentinus tigrinus
(1)
3a
Cu-oxidase_3-2qt6B05
B:9-131
3b
Cu-oxidase_3-2qt6B06
B:9-131
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