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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
2QSP
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
BOVINE HEMOGLOBIN AT PH 5.7
Authors
:
R. Aranda Iv, M. P. Richards, G. N. Phillips Jr.
Date
:
31 Jul 07 (Deposition) - 02 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hemoglobin, Heme, Iron, Metal-Binding, Oxygen Transport, Transport, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Aranda, H. Cai, C. E. Worley, E. J. Levin, R. Li, J. S. Olson, G. N. Phillips, M. P. Richards
Structural Analysis Of Fish Versus Mammalian Hemoglobins: Effect Of The Heme Pocket Environment On Autooxidation And Hemin Loss.
Proteins V. 75 217 2008
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:42 , PHE A:43 , PHE A:46 , HIS A:58 , LYS A:61 , LEU A:86 , HIS A:87 , LEU A:91 , ASN A:97 , PHE A:98 , LEU A:101 , LEU A:136 , HOH A:222 , HOH A:306 , HOH A:316
BINDING SITE FOR RESIDUE HEM A 142
2
AC2
SOFTWARE
THR B:37 , PHE B:40 , PHE B:41 , HIS B:62 , LYS B:65 , LEU B:90 , HIS B:91 , LEU B:95 , ASN B:101 , PHE B:102 , LEU B:105 , LEU B:140 , HOH B:164 , HOH B:262 , LYS D:7 , HOH D:238
BINDING SITE FOR RESIDUE HEM B 146
3
AC3
SOFTWARE
TYR C:42 , PHE C:43 , HIS C:45 , HIS C:58 , LYS C:61 , LEU C:83 , HIS C:87 , LEU C:91 , ASN C:97 , PHE C:98 , LEU C:101 , LEU C:136 , HOH C:374 , HOH C:397 , HOH C:417 , HOH C:426
BINDING SITE FOR RESIDUE HEM C 142
4
AC4
SOFTWARE
ALA C:4 , THR D:37 , PHE D:40 , PHE D:41 , HIS D:62 , LYS D:65 , SER D:69 , HIS D:91 , LEU D:95 , ASN D:101 , LEU D:140 , HOH D:153 , HOH D:168 , HOH D:178 , HOH D:210 , HOH D:222 , HOH D:236 , HOH D:262 , HOH D:324
BINDING SITE FOR RESIDUE HEM D 146
[
close Site info
]
SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_HBB_BOVIN_001 (G15S, chain B/D, )
2: VAR_HBB_BOVIN_002 (K18H, chain B/D, )
3: VAR_HBB_BOVIN_003 (D20G, chain B/D, )
4: VAR_HBB_BOVIN_004 (S43T, chain B/D, )
5: VAR_HBA_BOVIN_001 (H89Y, chain A/C, )
6: VAR_HBB_BOVIN_005 (K119N, chain B/D, )
7: VAR_HBB_BOVIN_006 (K131Q, chain B/D, )
8: VAR_HBA_BOVIN_002 (N131S, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_HBB_BOVIN_001
*
G
15
S
HBB_BOVIN
---
---
B/D
G
15
S
2
UniProt
VAR_HBB_BOVIN_002
*
K
18
H
HBB_BOVIN
---
---
B/D
K
18
H
3
UniProt
VAR_HBB_BOVIN_003
*
D
20
G
HBB_BOVIN
---
---
B/D
D
20
G
4
UniProt
VAR_HBB_BOVIN_004
*
S
43
T
HBB_BOVIN
---
---
B/D
S
43
T
5
UniProt
VAR_HBA_BOVIN_001
*
H
90
Y
HBA_BOVIN
---
---
A/C
H
89
Y
6
UniProt
VAR_HBB_BOVIN_005
*
K
119
N
HBB_BOVIN
---
---
B/D
K
119
N
7
UniProt
VAR_HBB_BOVIN_006
*
K
131
Q
HBB_BOVIN
---
---
B/D
K
131
Q
8
UniProt
VAR_HBA_BOVIN_002
*
N
132
S
HBA_BOVIN
---
---
A/C
N
131
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (B:2-145,D:2-145,A:2-141,C:2-141)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HBB_BOVIN
2-145
2
B:2-145
D:2-145
HBA_BOVIN
3-142
2
A:2-141
C:2-141
[
close PROSITE info
]
Exons
(6, 12)
Info
All Exons
Exon 1.1 (A:1-31 | C:1-31)
Exon 1.2 (A:31-99 | C:31-99)
Exon 1.3 (A:100-141 | C:100-141)
Exon 2.1 (B:1-29 | D:1-29)
Exon 2.2 (B:29-103 | D:29-103)
Exon 2.3 (B:104-145 | D:104-145)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
5: Boundary -/2.1
6: Boundary 2.1/2.2
7: Boundary 2.2/2.3
8: Boundary 2.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000037545
1
ENSBTAE00000380516
chr25:
669652-669785
134
HBA_BOVIN
1-32
32
2
A:1-31
C:1-31
31
31
1.2
ENSBTAT00000037545
2
ENSBTAE00000412716
chr25:
669887-670091
205
HBA_BOVIN
32-100
69
2
A:31-99
C:31-99
69
69
1.3
ENSBTAT00000037545
3
ENSBTAE00000409296
chr25:
670196-670419
224
HBA_BOVIN
101-142
42
2
A:100-141
C:100-141
42
42
2.1
ENSBTAT00000045694
1
ENSBTAE00000377266
chr15:
47825662-47825799
138
HBB_BOVIN
1-29
29
2
B:1-29
D:1-29
29
29
2.2
ENSBTAT00000045694
2
ENSBTAE00000383380
chr15:
47825928-47826150
223
HBB_BOVIN
29-103
75
2
B:29-103
D:29-103
75
75
2.3
ENSBTAT00000045694
3
ENSBTAE00000339283
chr15:
47827051-47827179
129
HBB_BOVIN
104-145
42
2
B:104-145
D:104-145
42
42
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2qspa_ (A:)
1b: SCOP_d2qspc_ (C:)
2a: SCOP_d2qspb_ (B:)
2b: SCOP_d2qspd_ (D:)
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Folds
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(
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Hemoglobin, alpha-chain
(292)
Cow (Bos taurus) [TaxId: 9913]
(11)
1a
d2qspa_
A:
1b
d2qspc_
C:
Protein domain
:
Hemoglobin, beta-chain
(292)
Cow (Bos taurus) [TaxId: 9913]
(11)
2a
d2qspb_
B:
2b
d2qspd_
D:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2qspB00 (B:1-145)
1b: CATH_2qspD00 (D:1-145)
1c: CATH_2qspA00 (A:1-141)
1d: CATH_2qspC00 (C:1-141)
View:
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Bovine (Bos taurus)
(2)
1a
2qspB00
B:1-145
1b
2qspD00
D:1-145
1c
2qspA00
A:1-141
1d
2qspC00
C:1-141
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Globin_2qspC01 (C:6-106)
1b: PFAM_Globin_2qspC02 (C:6-106)
1c: PFAM_Globin_2qspD01 (D:6-110)
1d: PFAM_Globin_2qspD02 (D:6-110)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
Globin
(291)
Family
:
Globin
(264)
Bos taurus (Bovine)
(5)
1a
Globin-2qspC01
C:6-106
1b
Globin-2qspC02
C:6-106
1c
Globin-2qspD01
D:6-110
1d
Globin-2qspD02
D:6-110
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Protein & NOT PROSITE
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Chain C
Chain D
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