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2QS9
Asym. Unit
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Asym.Unit (73 KB)
Biol.Unit 1 (37 KB)
Biol.Unit 2 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN RETINOBLASTOMA-BINDING PROTEIN 9 (RBBP-9). NESG TARGET HR2978
Authors
:
S. M. Vorobiev, M. Su, J. Seetharaman, A. Kuzin, C. X. Chen, K. Cunningham, L. Owens, M. Maglaqui, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date
:
30 Jul 07 (Deposition) - 14 Aug 07 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.72
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Retinoblastoma-Binding Protein 9, Retinoblastoma-Binding Protein 10, B5T Overexpressed Gene Protein, Bog, Rbbp9, Rbbp10, Hr2978, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Alternative Splicing, Cytoplasm, Nucleus, Phosphorylation, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Vorobiev, M. Su, J. Seetharaman, Y. J. Huang, C. X. Chen, M. Maglaqui, H. Janjua, M. Proudfoot, A. Yakunin, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong
Crystal Structure Of Human Retinoblastoma Binding Protein 9.
Proteins V. 74 526 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
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No.
Name
Count
Type
Full Name
1
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
(5, 10)
Info
All Exons
Exon 1.1a (A:3-33 | B:3-33)
Exon 1.2 (A:34-48 | B:34-48)
Exon 1.3 (A:48-83 | B:48-83)
Exon 1.4 (A:83-112 | B:83-112)
Exon 1.5d (A:112-186 | B:112-182)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5d
6: Boundary 1.5d/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000337227
1a
ENSE00001252529
chr20:
18477887-18477713
175
RBBP9_HUMAN
1-33
33
2
A:3-33
B:3-33
31
31
1.2
ENST00000337227
2
ENSE00000859319
chr20:
18476524-18476482
43
RBBP9_HUMAN
34-48
15
2
A:34-48
B:34-48
15
15
1.3
ENST00000337227
3
ENSE00000859318
chr20:
18474707-18474602
106
RBBP9_HUMAN
48-83
36
2
A:48-83
B:48-83
36
36
1.4
ENST00000337227
4
ENSE00000859316
chr20:
18471124-18471039
86
RBBP9_HUMAN
83-112
30
2
A:83-112
B:83-112
30
30
1.5d
ENST00000337227
5d
ENSE00001342801
chr20:
18470634-18467184
3451
RBBP9_HUMAN
112-186
75
2
A:112-186
B:112-182
75
71
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SCOP Domains
(0, 0)
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2qs9A00 (A:3-194)
1b: CATH_2qs9B00 (B:3-182)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
2qs9A00
A:3-194
1b
2qs9B00
B:3-182
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ser_hydrolase_2qs9B01 (B:7-182)
1b: PFAM_Ser_hydrolase_2qs9B02 (B:7-182)
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Clan
:
AB_hydrolase
(347)
Family
:
Ser_hydrolase
(2)
Homo sapiens (Human)
(1)
1a
Ser_hydrolase-2qs9B01
B:7-182
1b
Ser_hydrolase-2qs9B02
B:7-182
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Asym.Unit (73 KB)
Header - Asym.Unit
Biol.Unit 1 (37 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
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