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2QS1
Asym. Unit
Info
Asym.Unit (100 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (93 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX WITH UBP315 AT 1.80 ANGSTROMS RESOLUTION
Authors
:
G. M. Alushin, D. E. Jane, M. L. Mayer
Date
:
30 Jul 07 (Deposition) - 05 Aug 08 (Release) - 22 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Membrane Protein, Cell Junction, Glycoprotein, Ion Transport, Ionic Channel, Phosphorylation, Postsynaptic Cell Membrane, Receptor, Rna Editing, Synapse, Transmembrane, Transport
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Reference
:
G. M. Alushin, D. Jane, M. L. Mayer
Binding Site And Ligand Flexibility Revealed By High Resolution Crystal Structures Of Gluk1 Competitive Antagonists.
Neuropharmacology V. 60 126 2011
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 3-({3-[(2S)-2-AMINO-2-CARBOXYETHYL... (UB1a)
3b: 3-({3-[(2S)-2-AMINO-2-CARBOXYETHYL... (UB1b)
View:
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No.
Name
Count
Type
Full Name
1
1PE
2
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CL
2
Ligand/Ion
CHLORIDE ION
3
UB1
2
Ligand/Ion
3-({3-[(2S)-2-AMINO-2-CARBOXYETHYL]-5-METHYL-2,6-DIOXO-3,6-DIHYDROPYRIMIDIN-1(2H)-YL}METHYL)-4,5-DIBROMOTHIOPHENE-2-CARBOXYLIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:103 , ARG A:227 , HOH A:611
BINDING SITE FOR RESIDUE CL A 501
2
AC2
SOFTWARE
LYS B:103 , ARG B:227 , HOH B:610
BINDING SITE FOR RESIDUE CL B 502
3
AC3
SOFTWARE
LYS B:21 , SER B:22 , ASP B:23 , HOH B:662 , HOH B:667 , HOH B:670 , HOH B:761 , HOH B:770
BINDING SITE FOR RESIDUE 1PE B 601
4
AC4
SOFTWARE
ARG A:20 , LYS A:21 , SER A:22 , ASP A:23 , HOH A:685 , HOH A:696 , HOH A:701 , HOH A:755 , HOH A:767
BINDING SITE FOR RESIDUE 1PE A 602
5
AC5
SOFTWARE
GLU A:13 , TYR A:16 , TYR A:61 , PRO A:88 , LEU A:89 , THR A:90 , ARG A:95 , SER A:141 , THR A:142 , MET A:189 , GLU A:190 , SER A:193 , TYR A:216 , HOH A:672 , HOH A:751 , HOH A:753 , HOH A:793
BINDING SITE FOR RESIDUE UB1 A 603
6
AC6
SOFTWARE
GLU B:13 , TYR B:16 , TYR B:61 , PRO B:88 , LEU B:89 , THR B:90 , ARG B:95 , SER B:141 , THR B:142 , MET B:189 , GLU B:190 , SER B:193 , TYR B:216 , HOH B:641 , HOH B:743 , HOH B:750 , HOH B:767
BINDING SITE FOR RESIDUE UB1 B 602
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2qs1a_ (A:)
1b: SCOP_d2qs1b_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
automated matches
(267)
Protein domain
:
automated matches
(267)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(73)
1a
d2qs1a_
A:
1b
d2qs1b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2qs1A01 (A:4-108,A:214-254)
1b: CATH_2qs1B01 (B:4-108,B:214-254)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rat (Rattus norvegicus)
(37)
1a
2qs1A01
A:4-108,A:214-254
1b
2qs1B01
B:4-108,B:214-254
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Lig_chan_2qs1B01 (B:119-254)
1b: PFAM_Lig_chan_2qs1B02 (B:119-254)
2a: PFAM_Lig_chan_Glu_bd_2qs1B03 (B:15-79)
2b: PFAM_Lig_chan_Glu_bd_2qs1B04 (B:15-79)
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Clan
:
Ion_channel
(150)
Family
:
Lig_chan
(109)
Rattus norvegicus (Rat)
(101)
1a
Lig_chan-2qs1B01
B:119-254
1b
Lig_chan-2qs1B02
B:119-254
Clan
:
PBP
(391)
Family
:
Lig_chan-Glu_bd
(91)
Rattus norvegicus (Rat)
(86)
2a
Lig_chan-Glu_bd-2qs1B03
B:15-79
2b
Lig_chan-Glu_bd-2qs1B04
B:15-79
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Asymmetric Unit 1
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