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2QRQ
Biol. Unit 1
Info
Asym.Unit (158 KB)
Biol.Unit 1 (301 KB)
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(1)
Title
:
GLYCOGEN PHOSPHORYLASE B IN COMPLEX WITH (1R)-3'-(4-METHYLPHENYL)-SPIRO[1,5-ANHYDRO-D-GLUCITOL-1,5'-ISOXAZOLINE]
Authors
:
G. Gizilis, K. M. Alexacou, E. D. Chrysina, S. E. Zographos, D. D. Leonidas, N. G. Oikonomakos
Date
:
28 Jul 07 (Deposition) - 29 Jul 08 (Release) - 20 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Glycogenolysis, Type 2 Diabetes, Acetylation, Allosteric Enzyme, Carbohydrate Metabolism, Glycogen Metabolism, Glycosyltransferase, Nucleotide-Binding, Phosphorylation, Pyridoxal Phosphate, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Benltifa, J. M. Hayes, S. Vidal, D. Gueyrard, P. G. Goekjian, J. P. Praly, G. Kizilis, C. Tiraidis, K. M. Alexacou, E. D. Chrysina, S. E. Zographos, D. D. Leonidas, G. Archontis, N. G. Oikonomakos
Glucose-Based Spiro-Isoxazolines: A New Family Of Potent Glycogen Phosphorylase Inhibitors.
Bioorg. Med. Chem. V. 17 7368 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 36)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
1b: DIMETHYL SULFOXIDE (DMSb)
1c: DIMETHYL SULFOXIDE (DMSc)
1d: DIMETHYL SULFOXIDE (DMSd)
1e: DIMETHYL SULFOXIDE (DMSe)
1f: DIMETHYL SULFOXIDE (DMSf)
1g: DIMETHYL SULFOXIDE (DMSg)
1h: DIMETHYL SULFOXIDE (DMSh)
1i: DIMETHYL SULFOXIDE (DMSi)
1j: DIMETHYL SULFOXIDE (DMSj)
1k: DIMETHYL SULFOXIDE (DMSk)
1l: DIMETHYL SULFOXIDE (DMSl)
1m: DIMETHYL SULFOXIDE (DMSm)
1n: DIMETHYL SULFOXIDE (DMSn)
1o: DIMETHYL SULFOXIDE (DMSo)
1p: DIMETHYL SULFOXIDE (DMSp)
2a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
3a: (3S,5R,7R,8S,9S,10R)-7-(HYDROXYMET... (S13a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DMS
32
Ligand/Ion
DIMETHYL SULFOXIDE
2
LLP
2
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
3
S13
2
Ligand/Ion
(3S,5R,7R,8S,9S,10R)-7-(HYDROXYMETHYL)-3-(4-METHYLPHENYL)-1,6-DIOXA-2-AZASPIRO[4.5]DECANE-8,9,10-TRIOL
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:88 , LEU A:136 , ASP A:283 , HIS A:341 , HIS A:377 , ASN A:484 , TYR A:573 , GLU A:672 , ALA A:673 , SER A:674 , GLY A:675 , HOH A:1042 , HOH A:1169 , HOH A:1456 , HOH A:1893
BINDING SITE FOR RESIDUE S13 A 998
02
AC2
SOFTWARE
TRP A:67 , ILE A:68 , ARG A:193
BINDING SITE FOR RESIDUE DMS A 931
03
AC3
SOFTWARE
GLN A:219 , LYS A:294
BINDING SITE FOR RESIDUE DMS A 936
04
AC4
SOFTWARE
HIS A:201 , TRP A:215 , ARG A:351 , LEU A:356 , HOH A:1066
BINDING SITE FOR RESIDUE DMS A 937
05
AC5
SOFTWARE
ARG A:519 , GLU A:701 , GLU A:702 , ALA A:703 , HOH A:1154
BINDING SITE FOR RESIDUE DMS A 938
06
AC6
SOFTWARE
GLU A:706 , PHE A:708 , PHE A:709 , ARG A:786 , HOH A:1242 , HOH A:1761
BINDING SITE FOR RESIDUE DMS A 939
07
AC7
SOFTWARE
ARG A:66 , LEU A:102 , ARG A:234 , ASN A:236 , ARG A:833 , HOH A:1104
BINDING SITE FOR RESIDUE DMS A 940
08
AC8
SOFTWARE
TYR A:548 , GLU A:552 , TYR A:553 , ARG A:649 , HOH A:1321 , HOH A:1713
BINDING SITE FOR RESIDUE DMS A 942
09
AC9
SOFTWARE
GLN A:264 , LEU A:267 , ASP A:268 , ASN A:270 , ASN A:274
BINDING SITE FOR RESIDUE DMS A 945
10
BC1
SOFTWARE
TYR A:553 , PHE A:644 , LEU A:645 , GLU A:646 , HOH A:1120
BINDING SITE FOR RESIDUE DMS A 946
11
BC2
SOFTWARE
HIS A:767 , ASP A:769
BINDING SITE FOR RESIDUE DMS A 947
12
BC3
SOFTWARE
THR A:197 , LEU A:222 , HOH A:1737
BINDING SITE FOR RESIDUE DMS A 948
13
BC4
SOFTWARE
ALA A:535 , PRO A:794 , THR A:798
BINDING SITE FOR RESIDUE DMS A 953
14
BC5
SOFTWARE
ARG A:427 , HIS A:443 , THR A:466 , ILE A:467 , PHE A:468 , LYS A:469 , ASP A:470 , PHE A:471
BINDING SITE FOR RESIDUE DMS A 955
15
BC6
SOFTWARE
HIS A:36 , PHE A:37 , HOH A:1462
BINDING SITE FOR RESIDUE DMS A 956
16
BC7
SOFTWARE
GLN A:408 , LEU A:411 , ASN A:412 , ASN A:595
BINDING SITE FOR RESIDUE DMS A 958
17
BC8
SOFTWARE
LEU A:271 , ASN A:274 , HOH A:1603
BINDING SITE FOR RESIDUE DMS A 972
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PHOSPHORYLASE (A:672-684)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHOSPHORYLASE
PS00102
Phosphorylase pyridoxal-phosphate attachment site.
PYGM_RABIT
673-685
2
A:672-684
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2qrqa_ (A:)
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Protein Domains
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Superfamily
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Family
:
Oligosaccharide phosphorylase
(199)
Protein domain
:
automated matches
(106)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(99)
1a
d2qrqa_
A:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2qrqA02 (A:486-812)
1b: CATH_2qrqA01 (A:10-485,A:813-835)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glycogen Phosphorylase B;
(202)
Rabbit (Oryctolagus cuniculus)
(113)
1a
2qrqA02
A:486-812
1b
2qrqA01
A:10-485,A:813-835
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Phosphorylase_2qrqA01 (A:111-829)
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Clan
:
GT-B
(132)
Family
:
Phosphorylase
(83)
Oryctolagus cuniculus (Rabbit)
(71)
1a
Phosphorylase-2qrqA01
A:111-829
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Chain A
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Asym.Unit (158 KB)
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