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2QRI
Biol. Unit 2
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Asym.Unit (147 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (73 KB)
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Title
:
CRYSTAL STRUCTURE OF A SINGLE CHAIN TRIMER COMPOSED OF THE MHC I HEAVY CHAIN H-2KB WT, BETA-2MICROGLOBULIN, AND OVALBUMIN-DERIVED PEPTIDE.
Authors
:
V. E. Mitaksov, D. H. Fremont
Date
:
28 Jul 07 (Deposition) - 06 Nov 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Mhc-I, Ova, Single Chain Mhc-I, Glycoprotein, Immune Response, Membrane, Mhc I, Transmembrane, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Mitaksov, S. M. Truscott, L. Lybarger, J. M. Connolly, T. H. Hansen, D. H. Fremont
Structural Engineering Of Pmhc Reagents For T Cell Vaccines And Diagnostics.
Chem. Biol. V. 14 909 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_B2MG_MOUSE_001 (G9PI, chain B, )
2: VAR_B2MG_MOUSE_002 (H34BQ, chain B, )
3: VAR_B2MG_MOUSE_003 (K44BE, chain B, )
4: VAR_B2MG_MOUSE_004 (R81BT, chain B, )
5: VAR_B2MG_MOUSE_005 (A85BD, chain B, )
6: VAR_B2MG_MOUSE_006 (A85BV, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_001
*
V
8
I
B2MG_MOUSE
---
---
B
G
9P
I
2
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
B
H
34B
Q
3
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
B
K
44B
E
4
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
B
R
81B
T
5
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
B
A
85B
D
6
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
B
A
85B
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:257H-263H)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
1
-
B:78B-84B
HA1B_MOUSE
278-284
1
-
B:257H-263H
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Exons
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SCOP Domains
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2qriA02 (A:1H-181H)
1b: CATH_2qriB02 (B:1H-181H)
2a: CATH_2qriA01 (A:1B-99B)
2b: CATH_2qriB01 (B:1B-99B)
2c: CATH_2qriA03 (A:182H-276H)
2d: CATH_2qriB03 (B:182H-276H)
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)
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)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
2qriA02
A:1H-181H
1b
2qriB02
B:1H-181H
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
2qriA01
A:1B-99B
2b
2qriB01
B:1B-99B
2c
2qriA03
A:182H-276H
2d
2qriB03
B:182H-276H
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_C1_set_2qriB01 (B:188H-271H)
1b: PFAM_C1_set_2qriB02 (B:188H-271H)
2a: PFAM_MHC_I_2qriB03 (B:1H-179H)
2b: PFAM_MHC_I_2qriB04 (B:1H-179H)
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)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Mus musculus (Mouse)
(118)
1a
C1-set-2qriB01
B:188H-271H
1b
C1-set-2qriB02
B:188H-271H
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Mus musculus (Mouse)
(60)
2a
MHC_I-2qriB03
B:1H-179H
2b
MHC_I-2qriB04
B:1H-179H
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Asymmetric Unit 1
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Asym.Unit (147 KB)
Header - Asym.Unit
Biol.Unit 1 (74 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
Header - Biol.Unit 2
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