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2QQS
Asym. Unit
Info
Asym.Unit (45 KB)
Biol.Unit 1 (21 KB)
Biol.Unit 2 (21 KB)
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(1)
Title
:
JMJD2A TANDEM TUDOR DOMAINS IN COMPLEX WITH A TRIMETHYLATED HISTONE H4-K20 PEPTIDE
Authors
:
J. Lee, M. V. Botuyan, G. Mer
Date
:
26 Jul 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.82
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Histone Lysine Demethylase, Metal Binding Protein, Protein- Methylated Peptide Complex, Chromatin Regulator, Dioxygenase, Host-Virus Interaction, Iron, Metal-Binding, Nucleus, Oxidoreductase, Phosphorylation, Polymorphism, Transcription, Transcription Regulation, Zinc, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Lee, J. R. Thompson, M. V. Botuyan, G. Mer
Distinct Binding Modes Specify The Recognition Of Methylated Histones H3K4 And H4K20 By Jmjd2A-Tudor.
Nat. Struct. Mol. Biol. V. 15 109 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-TRIMETHYLLYSINE (M3La)
1b: N-TRIMETHYLLYSINE (M3Lb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
M3L
2
Mod. Amino Acid
N-TRIMETHYLLYSINE
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(4, 8)
Info
All Exons
Exon 1.21 (A:897-947 | B:899-947)
Exon 1.22a (A:948-987 | B:948-987)
Exon 1.23 (A:988-1005 | B:988-1006)
Exon 2.1 (C:17-21 | D:17-23)
View:
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All Exon Boundaries
1: Boundary 1.20/1.21
2: Boundary 1.21/1.22a
3: Boundary 1.22a/1.23
4: Boundary 1.23/1.24a
5: Boundary -/2.1
6: Boundary 2.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000372396
1b
ENSE00001894244
chr1:
44115829-44115923
95
KDM4A_HUMAN
-
0
0
-
-
1.3a
ENST00000372396
3a
ENSE00002186574
chr1:
44118808-44118984
177
KDM4A_HUMAN
1-46
46
0
-
-
1.5
ENST00000372396
5
ENSE00001143140
chr1:
44121262-44121437
176
KDM4A_HUMAN
47-105
59
0
-
-
1.6
ENST00000372396
6
ENSE00000957378
chr1:
44125969-44126083
115
KDM4A_HUMAN
105-143
39
0
-
-
1.7
ENST00000372396
7
ENSE00000957379
chr1:
44128565-44128758
194
KDM4A_HUMAN
144-208
65
0
-
-
1.8
ENST00000372396
8
ENSE00000957380
chr1:
44131367-44131416
50
KDM4A_HUMAN
208-225
18
0
-
-
1.9b
ENST00000372396
9b
ENSE00001690958
chr1:
44132123-44132226
104
KDM4A_HUMAN
225-259
35
0
-
-
1.10c
ENST00000372396
10c
ENSE00000957382
chr1:
44132625-44132762
138
KDM4A_HUMAN
260-305
46
0
-
-
1.11
ENST00000372396
11
ENSE00000957383
chr1:
44133443-44133690
248
KDM4A_HUMAN
306-388
83
0
-
-
1.12
ENST00000372396
12
ENSE00000957384
chr1:
44134771-44134970
200
KDM4A_HUMAN
388-455
68
0
-
-
1.13b
ENST00000372396
13b
ENSE00000957385
chr1:
44137176-44137546
371
KDM4A_HUMAN
455-578
124
0
-
-
1.14
ENST00000372396
14
ENSE00001080538
chr1:
44149355-44149475
121
KDM4A_HUMAN
579-619
41
0
-
-
1.15
ENST00000372396
15
ENSE00000957387
chr1:
44154585-44154766
182
KDM4A_HUMAN
619-679
61
0
-
-
1.16b
ENST00000372396
16b
ENSE00001143055
chr1:
44156516-44156720
205
KDM4A_HUMAN
680-748
69
0
-
-
1.17
ENST00000372396
17
ENSE00001143047
chr1:
44157167-44157243
77
KDM4A_HUMAN
748-773
26
0
-
-
1.18b
ENST00000372396
18b
ENSE00001143039
chr1:
44157927-44157982
56
KDM4A_HUMAN
774-792
19
0
-
-
1.19
ENST00000372396
19
ENSE00001143030
chr1:
44159665-44159773
109
KDM4A_HUMAN
792-828
37
0
-
-
1.20
ENST00000372396
20
ENSE00001143023
chr1:
44160380-44160565
186
KDM4A_HUMAN
829-890
62
0
-
-
1.21
ENST00000372396
21
ENSE00001080535
chr1:
44163514-44163684
171
KDM4A_HUMAN
891-947
57
2
A:897-947
B:899-947
51
49
1.22a
ENST00000372396
22a
ENSE00001080539
chr1:
44169288-44169407
120
KDM4A_HUMAN
948-987
40
2
A:948-987
B:948-987
40
40
1.23
ENST00000372396
23
ENSE00001080536
chr1:
44169691-44169783
93
KDM4A_HUMAN
988-1018
31
2
A:988-1005
B:988-1006
18
19
1.24a
ENST00000372396
24a
ENSE00001841454
chr1:
44169901-44171186
1286
KDM4A_HUMAN
1019-1064
46
0
-
-
2.1
ENST00000377803
1
ENSE00001475159
chr6:
26104104-26104518
415
H4_HUMAN
1-127
127
2
C:17-21
D:17-23
5
7
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2qqsa1 (A:897-955)
1b: SCOP_d2qqsa2 (A:956-1005)
1c: SCOP_d2qqsb1 (B:899-955)
1d: SCOP_d2qqsb2 (B:956-1006)
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
Tudor domain
(24)
Protein domain
:
Jumonji domain-containing protein 2A
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2qqsa1
A:897-955
1b
d2qqsa2
A:956-1005
1c
d2qqsb1
B:899-955
1d
d2qqsb2
B:956-1006
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (45 KB)
Header - Asym.Unit
Biol.Unit 1 (21 KB)
Header - Biol.Unit 1
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