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Getting 'Biological Unit' information from database.
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2QQI
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE B1B2 DOMAINS FROM HUMAN NEUROPILIN-1
Authors
:
B. A. Appleton, W. Desmarais, C. Wiesmann
Date
:
26 Jul 07 (Deposition) - 20 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Vegf Receptor, Semaphorin Receptor, Angiogenesis, Developmental Protein, Differentiation, Glycoprotein, Heparan Sulfate, Membrane, Neurogenesis, Proteoglycan, Secreted, Transmembrane, Hormone, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. A. Appleton, P. Wu, J. Maloney, J. Yin, W. C. Liang, S. Stawicki, K. Mortara, K. K. Bowman, J. M. Elliott, W. Desmarais, J. F. Bazan, A. Bagri, M. Tessier-Lavigne, A. W. Koch, Y. Wu, R. J. Watts, C. Wiesman
Structural Studies Of Neuropilin/Antibody Complexes Provide Insights Into Semaphorin And Vegf Binding
Embo J. V. 26 4902 2007
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:272 , LYS A:514 , PHE A:515 , LYS A:516 , SER A:539 , TYR A:565 , PRO A:566 , GLU A:567
BINDING SITE FOR RESIDUE GOL A 3287
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_046537 (F561L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_046537
F
561
L
NRP1_HUMAN
Polymorphism
2228637
A
F
561
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: FA58C_3 (A:275-424|A:431-583)
2: FA58C_1 (A:314-343|A:470-502)
3: FA58C_2 (A:408-424|A:566-583)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FA58C_3
PS50022
Coagulation factors 5/8 type C domain (FA58C) profile.
NRP1_HUMAN
275-424
431-583
2
A:275-424
A:431-583
2
FA58C_1
PS01285
Coagulation factors 5/8 type C domain (FA58C) signature 1.
NRP1_HUMAN
314-343
470-502
2
A:314-343
A:470-502
3
FA58C_2
PS01286
Coagulation factors 5/8 type C domain (FA58C) signature 2.
NRP1_HUMAN
408-424
566-583
2
A:408-424
A:566-583
[
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Exons
(6, 6)
Info
All Exons
Exon 1.6 (A:272-272)
Exon 1.7 (A:272-327)
Exon 1.9 (A:328-379)
Exon 1.10 (A:380-428)
Exon 1.11a (A:428-538)
Exon 1.12a (A:539-586)
View:
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All Exon Boundaries
1: Boundary 1.5a/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11a
6: Boundary 1.11a/1.12a
7: Boundary 1.12a/1.14b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000374867
2a
ENSE00002163568
chr10:
33623833-33623238
596
NRP1_HUMAN
1-25
25
0
-
-
1.3
ENST00000374867
3
ENSE00001716361
chr10:
33619810-33619636
175
NRP1_HUMAN
25-83
59
0
-
-
1.4
ENST00000374867
4
ENSE00001682768
chr10:
33559784-33559603
182
NRP1_HUMAN
83-144
62
0
-
-
1.5a
ENST00000374867
5a
ENSE00001639362
chr10:
33552801-33552574
228
NRP1_HUMAN
144-220
77
0
-
-
1.6
ENST00000374867
6
ENSE00001792511
chr10:
33545399-33545244
156
NRP1_HUMAN
220-272
53
1
A:272-272
1
1.7
ENST00000374867
7
ENSE00001792470
chr10:
33543122-33542956
167
NRP1_HUMAN
272-327
56
1
A:272-327
56
1.9
ENST00000374867
9
ENSE00001681421
chr10:
33515217-33515062
156
NRP1_HUMAN
328-379
52
1
A:328-379
52
1.10
ENST00000374867
10
ENSE00001787691
chr10:
33510791-33510647
145
NRP1_HUMAN
380-428
49
1
A:380-428
49
1.11a
ENST00000374867
11a
ENSE00001704766
chr10:
33502645-33502314
332
NRP1_HUMAN
428-538
111
1
A:428-538
111
1.12a
ENST00000374867
12a
ENSE00001740916
chr10:
33496644-33496500
145
NRP1_HUMAN
539-587
49
1
A:539-586
48
1.14b
ENST00000374867
14b
ENSE00001661322
chr10:
33491923-33491819
105
NRP1_HUMAN
587-622
36
0
-
-
1.15a
ENST00000374867
15a
ENSE00002161399
chr10:
33486637-33486578
60
NRP1_HUMAN
622-642
21
0
-
-
1.18
ENST00000374867
18
ENSE00001689493
chr10:
33481346-33481209
138
NRP1_HUMAN
642-688
47
0
-
-
1.19
ENST00000374867
19
ENSE00001674853
chr10:
33475416-33475145
272
NRP1_HUMAN
688-778
91
0
-
-
1.20a
ENST00000374867
20a
ENSE00001756610
chr10:
33474652-33474556
97
NRP1_HUMAN
779-811
33
0
-
-
1.21
ENST00000374867
21
ENSE00001640966
chr10:
33471676-33471626
51
NRP1_HUMAN
811-828
18
0
-
-
1.22c
ENST00000374867
22c
ENSE00001636238
chr10:
33469293-33466422
2872
NRP1_HUMAN
828-923
96
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2qqia1 (A:427-586)
1b: SCOP_d2qqia2 (A:272-426)
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Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
(17)
Protein domain
:
C2 domain of factor VIII
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2qqia1
A:427-586
1b
d2qqia2
A:272-426
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2qqiA02 (A:428-586)
1b: CATH_2qqiA01 (A:272-427)
View:
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)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
1a
2qqiA02
A:428-586
1b
2qqiA01
A:272-427
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_F5_F8_type_C_2qqiA01 (A:446-580)
1b: PFAM_F5_F8_type_C_2qqiA02 (A:446-580)
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Organisms
(
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(
)
Clan
:
GBD
(153)
Family
:
F5_F8_type_C
(45)
Homo sapiens (Human)
(10)
1a
F5_F8_type_C-2qqiA01
A:446-580
1b
F5_F8_type_C-2qqiA02
A:446-580
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Chain A
Asymmetric Unit 1
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Asym.Unit (63 KB)
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